cluster # 1571

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Anopheles gambiae
cluster # 1571 cluster # 1571 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1571#0 length = 582 sequences # 1

consensus_1571#1 length = 466 sequences # 1

consensusID : consensus_1571#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [ATGCCGAGGTTTNTTTAGTGAGAACATGCGGACGTAGCGAATCAAACCAGCAAGCTGGATGGTGCTGTGTACGATCTGACGAAGAATCAGTTCAACATCCAGAAGGATGTGAACAGTTTGAGACAGTCACTATTCGAGATACGGCTTGCATTGGTGGCGAACCGTACGAACGGAAGCGTTGGGGCGGATAACGACGAGCTACGGCGTATGATCGAGACGGCAAACAATCTGACGCTGGACAAGCAGGAGCTGCGTGCCAAAACACTCGAGTTTAAGATATACGAGCAGACGTTTAAGGTGGATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGAGTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTACTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAATATTGCAGTGTAGGGTTATGCTTGTGTCCTAATAGGGTTGACTCATGATTCGGNANTTTTNAAATTAAACCGTGGATCGTACGGTGTTGAACGAACGGCGCTA]

[+] EMBL AL692861             [ATGCCGAGGTTTNTTTAGTGAGAACATGCGGACGTAGCGAATCAAACCAGCAAGCTGGATGGTGCTGTGTACGATCTGACGAAGAATCAGTTCAACATCCAGAAGGATGTGAACAGTTTGAGACAGTCACTATTCGAGATACGGCTTGCATTGGTGGCGAACCGTACGAACGGAAGCGTTGGGGCGGATAACGACGAGCTACGGCGTATGATCGAGACGGCAAACAATCTGACGCTGGACAAGCAGGAGCTGCGTGCCAAAACACTCGAGTTTAAGATATACGAGCAGACGTTTAAGGTGGATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGAGTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTACTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAATATTGCAGTGTAGGGTTATGCTTGTGTCCTAATAGGGTTGACTCATGATTCGGNANTTTTNAAATTAAACCGTGGATCGTACGGTGTTGAACGAACGGCGCTA]




>consensus_1571#0
ATGCCGAGGTTTNTTTAGTGAGAACATGCGGACGTAGCGAATCAAACCAGCAAGCTGGAT
GGTGCTGTGTACGATCTGACGAAGAATCAGTTCAACATCCAGAAGGATGTGAACAGTTTG
AGACAGTCACTATTCGAGATACGGCTTGCATTGGTGGCGAACCGTACGAACGGAAGCGTT
GGGGCGGATAACGACGAGCTACGGCGTATGATCGAGACGGCAAACAATCTGACGCTGGAC
AAGCAGGAGCTGCGTGCCAAAACACTCGAGTTTAAGATATACGAGCAGACGTTTAAGGTG
GATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGA
GTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTA
CTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAAT
ATTGCAGTGTAGGGTTATGCTTGTGTCCTAATAGGGTTGACTCATGATTCGGNANTTTTN
AAATTAAACCGTGGATCGTACGGTGTTGAACGAACGGCGCTA

consensusID : consensus_1571#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [CCGCGGACGCGTGGGCGAGCAGACGTTTAAGGTGGATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGAGTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTACTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAATATTGCAGTGTTGGTTATGCTTTGTGTCCTAATAGGGTTGATCATGATTGGAATTTTTAAATTAAACCGTGGATCGTACGGTGTTGAACGAAGGCGCTATGCTAACAGAGATAGCAGCATGGCAACGATAATCAATAATGATATCTAATTACAATATAGAACCCTATTTTCAAACACGTTACAAAGAGTAGCATGTCGCGTTTATAAATAAAAAAAAACACACACATTTGTTAGAATGGTTATAGGTCACGAC]

[+] EMBL BM639648             [CCGCGGACGCGTGGGCGAGCAGACGTTTAAGGTGGATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGAGTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTACTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAATATTGCAGTGTTGGTTATGCTTTGTGTCCTAATAGGGTTGATCATGATTGGAATTTTTAAATTAAACCGTGGATCGTACGGTGTTGAACGAAGGCGCTATGCTAACAGAGATAGCAGCATGGCAACGATAATCAATAATGATATCTAATTACAATATAGAACCCTATTTTCAAACACGTTACAAAGAGTAGCATGTCGCGTTTATAAATAAAAAAAAACACACACATTTGTTAGAATGGTTATAGGTCACGAC]




>consensus_1571#1
CCGCGGACGCGTGGGCGAGCAGACGTTTAAGGTGGATAAGGCGTTGGAGTTGGCGCAGGA
AAGTATAGATAAGAACACAGTCCTAGGCAAACGAGTCGAGCAGTGGATCAGCAACATTGT
GAGCACGAGTGGTATGTTGGGGCAGGATCGGTTACTAGTCCATCAGAGTGCAGCACAAGT
TGAAGGTAGCGGTGGAAATGGCAATGGAGTGAATATTGCAGTGTTGGTTATGCTTTGTGT
CCTAATAGGGTTGATCATGATTGGAATTTTTAAATTAAACCGTGGATCGTACGGTGTTGA
ACGAAGGCGCTATGCTAACAGAGATAGCAGCATGGCAACGATAATCAATAATGATATCTA
ATTACAATATAGAACCCTATTTTCAAACACGTTACAAAGAGTAGCATGTCGCGTTTATAA
ATAAAAAAAAACACACACATTTGTTAGAATGGTTATAGGTCACGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1571#0      ATGCCGAGGTTTNTTTAGTGAGAACATGCGGACGTAGCGAATCAAACCAGCAAGCTGGAT 60
consensus_1571#1      ------------------------------------------------------------
                                                                                  

consensus_1571#0      GGTGCTGTGTACGATCTGACGAAGAATCAGTTCAACATCCAGAAGGATGTGAACAGTTTG 120
consensus_1571#1      ------------------------------------------------------------
                                                                                  

consensus_1571#0      AGACAGTCACTATTCGAGATACGGCTTGCATTGGTGGCGAACCGTACGAACGGAAGCGTT 180
consensus_1571#1      ------------------------------------------------------------
                                                                                  

consensus_1571#0      GGGGCGGATAACGACGAGCTACGGCGTATGATCGAGACGGCAAACAATCTGACGCTGGAC 240
consensus_1571#1      ------------------------------------------------------------
                                                                                  

consensus_1571#0      AAGCAGGAGCTGCGTGCCAAAACACTCGAGTTTAAGATATACGAGCAGACGTTTAAGGTG 300
consensus_1571#1      -------------------------CCGCGGACGCG-TGGGCGAGCAGACGTTTAAGGTG 34
                                                ** *     * *   *******************

consensus_1571#0      GATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGA 360
consensus_1571#1      GATAAGGCGTTGGAGTTGGCGCAGGAAAGTATAGATAAGAACACAGTCCTAGGCAAACGA 94
                      ************************************************************

consensus_1571#0      GTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTA 420
consensus_1571#1      GTCGAGCAGTGGATCAGCAACATTGTGAGCACGAGTGGTATGTTGGGGCAGGATCGGTTA 154
                      ************************************************************

consensus_1571#0      CTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAAT 480
consensus_1571#1      CTAGTCCATCAGAGTGCAGCACAAGTTGAAGGTAGCGGTGGAAATGGCAATGGAGTGAAT 214
                      ************************************************************

consensus_1571#0      ATTGCAGTGTAGGGTTATGCTT-GTGTCCTAATAGGGTTGACTCATGATTCGGNANTTTT 539
consensus_1571#1      ATTGCAGTGTTGG-TTATGCTTTGTGTCCTAATAGGGTTGA-TCATGATT--GGAATTTT 270
                      ********** ** ******** ****************** ********  * * ****

consensus_1571#0      NAAATTAAACCGTGGATCGTACGGTGTTGAACGAACGGCGCTA----------------- 582
consensus_1571#1      TAAATTAAACCGTGGATCGTACGGTGTTGAACGAA-GGCGCTATGCTAACAGAGATAGCA 329
                       ********************************** *******                 

consensus_1571#0      ------------------------------------------------------------
consensus_1571#1      GCATGGCAACGATAATCAATAATGATATCTAATTACAATATAGAACCCTATTTTCAAACA 389
                                                                                  

consensus_1571#0      ------------------------------------------------------------
consensus_1571#1      CGTTACAAAGAGTAGCATGTCGCGTTTATAAATAAAAAAAAACACACACATTTGTTAGAA 449
                                                                                  

consensus_1571#0      -----------------
consensus_1571#1      TGGTTATAGGTCACGAC 466