cluster # 1579

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Anopheles gambiae
cluster # 1579 cluster # 1579 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1579#0 length = 649 sequences # 1

consensus_1579#1 length = 589 sequences # 1

consensusID : consensus_1579#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 649
fasta sequence

                              [AGAAAGAAATTCCGTGCATTAGTGATCTCATCGACCACCGTTACGCCAGCGCGACAAAGTGTAAACACAACAACAACAAAAACGTTGCAATTAAACAGCGAAATATCATCCAGCTTTACACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAACGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAACGAGCGGCGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATCGGCTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCCAACTTTGCCAAAAAGCTTGCCTACTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTACACCCGGAGGAGCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTGGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGCATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGG]

[+] EMBL BX628070             [AGAAAGAAATTCCGTGCATTAGTGATCTCATCGACCACCGTTACGCCAGCGCGACAAAGTGTAAACACAACAACAACAAAAACGTTGCAATTAAACAGCGAAATATCATCCAGCTTTACACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAACGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAACGAGCGGCGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATCGGCTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCCAACTTTGCCAAAAAGCTTGCCTACTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTACACCCGGAGGAGCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTGGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGCATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGG]




>consensus_1579#0
AGAAAGAAATTCCGTGCATTAGTGATCTCATCGACCACCGTTACGCCAGCGCGACAAAGT
GTAAACACAACAACAACAAAAACGTTGCAATTAAACAGCGAAATATCATCCAGCTTTACA
CAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAAC
GTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAAC
GAGCGGCGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATC
GGCTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCCAACTTTGCCAAAAAGCTTGCCTAC
TCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTACACCCGGAGGAG
CTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGA
CCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTG
GACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGC
ATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGG

consensusID : consensus_1579#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [GCAGAATCCCCCGAGGTTAAACGTTGCAATTAAACAGCGCAAATATCATCCAGCTTTACACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAACGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAACGAGCGGGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATCGGTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCAACTTTGCCAAAAAGCTTGCCTACTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTAACCCGGAGGAGCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTGGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGCATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGGATGT]

[+] EMBL AL692881             [GCAGAATCCCCCGAGGTTAAACGTTGCAATTAAACAGCGCAAATATCATCCAGCTTTACACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAACGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAACGAGCGGGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATCGGTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCAACTTTGCCAAAAAGCTTGCCTACTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTAACCCGGAGGAGCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTGGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGCATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGGATGT]




>consensus_1579#1
GCAGAATCCCCCGAGGTTAAACGTTGCAATTAAACAGCGCAAATATCATCCAGCTTTACA
CAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAAC
GTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAAC
GAGCGGGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAATCG
GTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCAACTTTGCCAAAAAGCTTGCCTACTCG
CTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTAACCCGGAGGAGCTTT
CACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGGACCGA
AGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCTGGACA
ACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGGCATGA
AGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGGATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1579#0      AGAAAGAAATTCCGTGCATTAGTGATCTCATCGACCACCGTTACGCCAGCGCGACAAAGT 60
consensus_1579#1      ------------------------------------------------------------
                                                                                  

consensus_1579#0      GTAAACACAACAACAACAAAAACGTTGCAATTAAACAGCG-AAATATCATCCAGCTTTAC 119
consensus_1579#1      GCAGAATCCCCCGAGGTTAAA-CGTTGCAATTAAACAGCGCAAATATCATCCAGCTTTAC 59
                      * * *  *  *       *** ****************** *******************

consensus_1579#0      ACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAA 179
consensus_1579#1      ACAAAAAGTGATCTAGTGTGTCCGTAGTGATCCGTTGCCATACACGATGAAGCTGCTGAA 119
                      ************************************************************

consensus_1579#0      CGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAA 239
consensus_1579#1      CGTGCTACCGGCCGCCGCCTACTTTTTCCTCTTCGTGCTACTCTCCTCCAGTGACTTCAA 179
                      ************************************************************

consensus_1579#0      CGAGCGGCGAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAAT 299
consensus_1579#1      CGAGCGG-GAACGCTTGTCCTCGCGCAGGAGCCACTGTTCGAGCTGCCGGTACAGCTAAT 238
                      ******* ****************************************************

consensus_1579#0      CGGCTTCCCCGTGATCATTCTCTCCGTCCGGTTGGCCAACTTTGCCAAAAAGCTTGCCTA 359
consensus_1579#1      CGG-TTCCCCGTGATCATTCTCTCCGTCCGGTTGGC-AACTTTGCCAAAAAGCTTGCCTA 296
                      *** ******************************** ***********************

consensus_1579#0      CTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTACACCCGGAGGA 419
consensus_1579#1      CTCGCTAAATCCAAAGACCTACCAATCCCGCAGCCGCCGGGAGACGCTA-ACCCGGAGGA 355
                      ************************************************* **********

consensus_1579#0      GCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGG 479
consensus_1579#1      GCTTTCACGGCTAGCCATCGATGTGGCGCAGGCGGAAAAGAAAATTCTTCACGAGTTCGG 415
                      ************************************************************

consensus_1579#0      ACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCT 539
consensus_1579#1      ACCGAAGGCATGCATCGAGGAGGAACCGTGCCGGATTCACGCCGTCAACAGTGCCCGGCT 475
                      ************************************************************

consensus_1579#0      GGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGG 599
consensus_1579#1      GGACAACTATCAACCGGACTGGGAAGATATTCTGCAGAACTACAAATCGCAAACCAGTGG 535
                      ************************************************************

consensus_1579#0      CATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGG---- 649
consensus_1579#1      CATGAAGCAGTGGTACTTGCTGTCCGTCTTCCTCGGCGACTATCTGCGGGATGT 589
                      **************************************************