These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence [CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGAGAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAGTGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATTCAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAGTAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAGGTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGACGTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGNATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAACGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCAGTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNATCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANTACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACAAAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCATTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGTAGCGTTNGAATANAGGGAGCCA] [+] EMBL AL692888 [CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGAGAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAGTGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATTCAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAGTAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAGGTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGACGTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGNATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAACGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCAGTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNATCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANTACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACAAAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCATTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGTAGCGTTNGAATANAGGGAGCCA] consensusID : consensus_1581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [ATTAGNCGATCAGNNCAGTTCTAGCTGAGAGTTCCTATCGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAGTGTGTTTTAGAGCGTATCAGTTTACATAACATAACAGCGTATCAGTGACCAGTATTAAAGAAGCANAACAGTTTCCAAAACAACTGATATGAGCTCAGTCGCTGGTAGTAATGAAGGAATTGAATGCTGCAATAGTCAGTCAACAGGCGGTAAAGGTTTGTAGCCAGATGTTGAGCACAACATNCGAGGATGTCTGTCGAATCTCGCCGACGTCATGAACTATCCGTCTGCTATACTACGTCGCGATGGAAAATGTCGGAATCGGATCACATCGACATCTTCCGAATGACAACATGTGGGACGGNANTGTGAAGCCNAANATGAATTGGATGAGCAATCAATGCAACGAAGACAAAGTCTATCCTTGGACCAAGATCTCTATACAGCCAGANGAGTTGCACTATCGTAAAAAACGATTCCTAACTATTATGCTGCGCTACTCTATANTCGAAAATCCAGAGATACCATTGTTCAGGGAGCAAGACGGGTCTNCTNACGTGCATAACCACCAAACCTGGCCTCTGATACCT] [+] EMBL AL929877 [ATTAGNCGATCAGNNCAGTTCTAGCTGAGAGTTCCTATCGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAGTGTGTTTTAGAGCGTATCAGTTTACATAACATAACAGCGTATCAGTGACCAGTATTAAAGAAGCANAACAGTTTCCAAAACAACTGATATGAGCTCAGTCGCTGGTAGTAATGAAGGAATTGAATGCTGCAATAGTCAGTCAACAGGCGGTAAAGGTTTGTAGCCAGATGTTGAGCACAACATNCGAGGATGTCTGTCGAATCTCGCCGACGTCATGAACTATCCGTCTGCTATACTACGTCGCGATGGAAAATGTCGGAATCGGATCACATCGACATCTTCCGAATGACAACATGTGGGACGGNANTGTGAAGCCNAANATGAATTGGATGAGCAATCAATGCAACGAAGACAAAGTCTATCCTTGGACCAAGATCTCTATACAGCCAGANGAGTTGCACTATCGTAAAAAACGATTCCTAACTATTATGCTGCGCTACTCTATANTCGAAAATCCAGAGATACCATTGTTCAGGGAGCAAGACGGGTCTNCTNACGTGCATAACCACCAAACCTGGCCTCTGATACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1581#0 CGCGTTATNCTGAGGGAAGTGATCGTACCACTANATNCGATCTAAAGCAGTNCGAGCTGA 60 consensus_1581#1 -----------------------------ATTAGN--CGATC-AGNNCAGTTCTAGCTGA 28 * ** ***** * **** * ****** consensus_1581#0 GAGTNCCTATACGCGAGGAGCAACAAGCCAGGANGAATTTATTTTATGGAAATGATAAAG 120 consensus_1581#1 GAGTTCCTAT-CGCGAGGAGCAACAAGCCAGGAAGAATTTATTTTATGGAAATGATAAAG 87 **** ***** ********************** ************************** consensus_1581#0 TGTGTTCTTAGAGCGTATCAGTATNACATAACATAACAGCGTATACAGTGACCAGTCATT 180 consensus_1581#1 TGTGTT-TTAGAGCGTATCAGT-TTACATAACATAACAGCGTAT-CAGTGACCAGTA--T 142 ****** *************** * ******************* *********** * consensus_1581#0 CAAAGCAAGCAACACAGTTTCCAAACACCAACTGCATATTGCAGCTCNAGTCGCTGGTAG 240 consensus_1581#1 TAAAG-AAGCANAACAGTTTCCAAAA--CAACTG-ATAT--GAGCTCA-GTCGCTGGTAG 195 **** ***** ************ ****** **** ***** *********** consensus_1581#0 TAANATGACAGGGAATTGCAATGCTTAGAATGGTCAGTCAAACAAGGCGTGTCAANACAG 300 consensus_1581#1 TAATG----AAGGAATTG-AATGCT-GCAATAGTCAGTCAAC--AGGCG-GTAAAG---G 243 *** * ******* ****** *** ********* ***** ** ** * consensus_1581#0 GTTGCAGCCNAGAATGTATGAGCACAACAATCGCAGGCATGTCTGTCGAATCTCGCCGAC 360 consensus_1581#1 TTTGTAGCCA--GATGT-TGAGCACAACATNCGAGG--ATGTCTGTCGAATCTCGCCGAC 298 *** **** **** *********** ** * ********************** consensus_1581#0 GTACATGAACTATCCGTACGAGACTAATACTAACGTCGCGCACTGGACACAATGTACGGN 420 consensus_1581#1 GT-CATGAACTATCCGTCTG----CTATACTA-CGTCGCG--ATGGAA--AATGT-CGGA 347 ** ************** * ****** ******* **** ***** *** consensus_1581#0 ATCGGAATCACATACGGACATCTTCAGCACCTGNCNACATGTGGGNCCGGACAATGTGAA 480 consensus_1581#1 ATCGGA-TCACATC--GACATCTTCCGAA--TGACAACATGTGGGAC--GGNANTGTGAA 400 ****** ****** ********* * * ** * ********* * * * ****** consensus_1581#0 CGCCAACACAATGCACATTGGGNATNGCAGCCAATNCAAATGCAACGGCAAGCACNNCCA 540 consensus_1581#1 GCCNAANATGA-----ATTGGATG-AGCAATCAATGCAA---CGAAGACAA--------A 443 * ** * * ***** *** **** *** * * * *** * consensus_1581#0 GTCTTTCCTATGNACCCAAGCATACTCTCATACCAGCCCAGCANAGCAGTTGCAACCTNA 600 consensus_1581#1 GTCTATCCT-TGGACCAAG----ATCTCTATAC-AGCC----AGANGAGTTGCA---CTA 490 **** **** ** *** * * **** **** * * ******* * consensus_1581#0 TCGTAANAAAACGGCATCCCTAAACTTNTTAATTGCTATGCGCTCTCCTATATCGNAANT 660 consensus_1581#1 TCGTAAAAAA-CG--ATTCCTAA--CTATTA--TGCT--GCGCTACTCTATANTCGAAAA 541 ****** *** ** ** ***** * *** **** ***** ***** ** consensus_1581#0 ACCAGNAGATACCNTTGTTCAGGAGAAGCCCGGATCTATCTATTGTAGCNATAAACCACA 720 consensus_1581#1 TCCAGA-GATACCATTGTTCAGGGAG---CAAGACGGGTCTNCTNACGTGCATAACCACC 597 **** ****** ********* * ** *** * * ****** consensus_1581#0 AAAGCTTGGCTCTGATCCCTTGAAGNTAACTGGCGAATCAACGCACGAAACTGGAAAGCA 780 consensus_1581#1 AAACCTGGCCTCTGATACCT---------------------------------------- 617 *** ** * ******* *** consensus_1581#0 TTGTNNAATACCTGGTACCGGGAACCAGAACAAGAACGAAGAAAATAAGTATACTTGGGT 840 consensus_1581#1 ------------------------------------------------------------ consensus_1581#0 AGCGTTNGAATANAGGGAGCCA 862 consensus_1581#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||