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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[GAAAGCAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCACGAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACGGGCGCGGAATTTTAGTAAGGAACAGCTTCAGAAAGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTATCGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCACATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGACAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGTGTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTACATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAAATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGCTGCAACCGGACGAATTGTTGTTTGGGGAGTTGAAAATTGTAGAAAGAAGGTACGCACCGGAGCAACAGGAAGCAATACTCAGGGAAGCATCGGAAGAGATGGAGCAGGAAACACCGCACATATCCGAGCAACCGGGAA]
[+] EMBL BX625836 [GAAAGCAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCACGAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACGGGCGCGGAATTTTAGTAAGGAACAGCTTCAGAAAGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTATCGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCACATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGACAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGTGTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTACATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAAATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGCTGCAACCGGACGAATTGTTGTTTGGGGAGTTGAAAATTGTAGAAAGAAGGTACGCACCGGAGCAACAGGAAGCAATACTCAGGGAAGCATCGGAAGAGATGGAGCAGGAAACACCGCACATATCCGAGCAACCGGGAA]
consensusID : consensus_1591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCACGAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACGGGCGCGGAATTTTAGGTAAGAGAGACCACTCTGCGTGTCTGTTTGTCGAGGTTTTGCCGAATAATTTCACTTCTCTCTCGTGTCCTTTATGCATTTTTCCAGTAAGGAACAGCTTCAGAAAGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTATCGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCACATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGACAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGTGTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTACATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAAATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGC]
[+] EMBL BM649282 [CCGAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCACGAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACGGGCGCGGAATTTTAGGTAAGAGAGACCACTCTGCGTGTCTGTTTGTCGAGGTTTTGCCGAATAATTTCACTTCTCTCTCGTGTCCTTTATGCATTTTTCCAGTAAGGAACAGCTTCAGAAAGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTATCGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCACATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGACAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGTGTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTACATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAAATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1591#0 GAAAGCAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCAC 60
consensus_1591#1 ---CCGAAATCGGCCACGAAATCAAGTTAAAATGTGGAATGAAGATTTGAATGTTTTCAC 57
******************************************************
consensus_1591#0 GAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACG 120
consensus_1591#1 GAATGACCAAACACCCAAGCAGCCGGCAACAAAGGTAAATCGAGCGAAGTTGCCGAAACG 117
************************************************************
consensus_1591#0 GGCGCGGAATTTTAG--------------------------------------------- 135
consensus_1591#1 GGCGCGGAATTTTAGGTAAGAGAGACCACTCTGCGTGTCTGTTTGTCGAGGTTTTGCCGA 177
***************
consensus_1591#0 ------------------------------------------TAAGGAACAGCTTCAGAA 153
consensus_1591#1 ATAATTTCACTTCTCTCTCGTGTCCTTTATGCATTTTTCCAGTAAGGAACAGCTTCAGAA 237
******************
consensus_1591#0 AGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTAT 213
consensus_1591#1 AGCTCTGCGTAAGAAAAAGGAATGCAACGACAAGGCACAGCGTGTGGTGGAAACGCTTAT 297
************************************************************
consensus_1591#0 CGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCA 273
consensus_1591#1 CGAGCCGGGACGCACGGAGGATGAGCTGCTCACACTGCTGAAGGACATCAACCAATGCCA 357
************************************************************
consensus_1591#0 CATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGA 333
consensus_1591#1 CATGGAGGACATTGTACAGGAGCGGGCGATTGTGAAGATCTGTGGCTATCCGCTGTGTGA 417
************************************************************
consensus_1591#0 CAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGT 393
consensus_1591#1 CAATGAACTGAAAAACATCCCGAAGCAACAGTACGTCATATCGGTCACGCAGAACAAGGT 477
************************************************************
consensus_1591#0 GTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTA 453
consensus_1591#1 GTTCGACATTACGGAGAGGAAAAACTTTTGCAGCGGCGACTGCTACAAAGCGTCCAACTA 537
************************************************************
consensus_1591#0 CATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAA 513
consensus_1591#1 CATCAAGCAGCAGATGCTGACGAGCCCGCTTTGGCTGCGGGACCAGGAGGACATTCCGAA 597
************************************************************
consensus_1591#0 ATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGCT 573
consensus_1591#1 ATTCCGGCTCATTACCGGGCGGCAGCTGGTGTACCGGGAGACGGATGTGAAAAAGCCGC- 656
***********************************************************
consensus_1591#0 GCAACCGGACGAATTGTTGTTTGGGGAGTTGAAAATTGTAGAAAGAAGGTACGCACCGGA 633
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 GCAACAGGAAGCAATACTCAGGGAAGCATCGGAAGAGATGGAGCAGGAAACACCGCACAT 693
consensus_1591#1 ------------------------------------------------------------
consensus_1591#0 ATCCGAGCAACCGGGAA 710
consensus_1591#1 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||