cluster # 1600

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1600 cluster # 1600 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1600#0 length = 686 sequences # 1

consensus_1600#1 length = 534 sequences # 1

consensusID : consensus_1600#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 686
fasta sequence

                              [TTGCTGACAAACGGTTNAACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTGCTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCGTACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATTTTAGCACCTACGGATCCGTAGATCCCCTGATAAGTGTAAACCTTACCTCGTACACCGACTGGATAACGCGCTTTGTACTGTACCGACCACCGAAGTTGGAGCTTGTGTTCCGTGGTGGTGAGGATGAGTTCGATTTCGGCAGCAGCTGTGTGCTGAAGAATGGCACCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTGTGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAGGTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTACGTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAGTCCGTGCGTACTTT]

[+] EMBL BX620202             [TTGCTGACAAACGGTTNAACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTGCTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCGTACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATTTTAGCACCTACGGATCCGTAGATCCCCTGATAAGTGTAAACCTTACCTCGTACACCGACTGGATAACGCGCTTTGTACTGTACCGACCACCGAAGTTGGAGCTTGTGTTCCGTGGTGGTGAGGATGAGTTCGATTTCGGCAGCAGCTGTGTGCTGAAGAATGGCACCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTGTGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAGGTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTACGTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAGTCCGTGCGTACTTT]




>consensus_1600#0
TTGCTGACAAACGGTTNAACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAG
GAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGCTTCCGAG
AGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTGCTGGGATACGGACCAAC
GGCTTGTCCCCGGCACGATCCCCGTCGTACGCGGGGCAGGTTTGTTGGATGAATCTAATC
GTTTCATCCACGGTGTGACGACAGATTTTAGCACCTACGGATCCGTAGATCCCCTGATAA
GTGTAAACCTTACCTCGTACACCGACTGGATAACGCGCTTTGTACTGTACCGACCACCGA
AGTTGGAGCTTGTGTTCCGTGGTGGTGAGGATGAGTTCGATTTCGGCAGCAGCTGTGTGC
TGAAGAATGGCACCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATG
AGGCGAAAAGTGTGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTT
GCTGCCCTATAGGTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTG
TTAGTTTGTTACGTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGA
CTAGATTGTAAGTCCGTGCGTACTTT

consensusID : consensus_1600#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGAAAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAACGGTTCACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTTGCTTGGGATACGGACCAACGGTTGTCCCCGGCACGATCCCGTCGTACGCGGGCAGGTTGTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATTTAGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACCGACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCGGTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAATGG]

[+] EMBL AL692971             [AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGAAAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAACGGTTCACAGAACGCAGGTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTGCAAAGGTCGTATGCTGGACAGTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCACAATACACGTTGCTTGGGATACGGACCAACGGTTGTCCCCGGCACGATCCCGTCGTACGCGGGCAGGTTGTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATTTAGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACCGACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCGGTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAATGG]




>consensus_1600#1
AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGA
AAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAACGGTTCACAGAACGCAGGT
GCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATGTG
CAAAGGTCGTATGCTGGACAGTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGTTCA
CAATACACGTTGCTTGGGATACGGACCAACGGTTGTCCCCGGCACGATCCCGTCGTACGC
GGGCAGGTTGTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATTTAGCACCT
ACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACCGACGTGGAT
AACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCGGTGGTGCTG
ACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1600#0      ------------------------------------------------------------
consensus_1600#1      AGATCCCNNGTTAATGAGCGTAACGTGACACTGCACTGTGCTGTTAGCCGAACCGCTTGA 60
                                                                                  

consensus_1600#0      -------------------------------TTGCTGACAAACGGTTNAACAGAACGCAG 29
consensus_1600#1      AAACCTGATACCAAACTGCATTCAAGCTTGGTTGCTGACAA-CGGTTCA-CAGAACGCAG 118
                                                     ********** ***** * **********

consensus_1600#0      GTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATG 89
consensus_1600#1      GTGCCTGTTTACAAGCAAAACAAATCATCAGGAATTCTTGGACTTCCGGCAAGCCGAATG 178
                      ************************************************************

consensus_1600#0      TGCAAAGGTCGTATGCTGGACAGCTTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGT 149
consensus_1600#1      TGCAAAGGTCGTATGCTGGACAG-TTCCGAGAGTTGGTAGGTGAAACCGTTGCTCACAGT 237
                      *********************** ************************************

consensus_1600#0      TCACAATACACGTG--CTGGGATACGGACCAACGGCTTGTCCCCGGCACGATCCCCGTCG 207
consensus_1600#1      TCACAATACACGTTGCTTGGGATACGGACCAACGG-TTGTCCCCGGCACGATCCC-GTCG 295
                      *************    ****************** ******************* ****

consensus_1600#0      TACGCGGGGCAGGTTTGTTGGATGAATCTAATCGTTTCATCCACGGTGTGACGACAGATT 267
consensus_1600#1      TACGCGGG-CAGGTT--GTGGATGAATCTAATCGTTTCATACACGGTGTGACGACAGATT 352
                      ******** ******   ********************** *******************

consensus_1600#0      TTAGCACCTACGGATCCGTAGATCCCCT-GATAAGTGTAAACCTT--ACCTCG-TACACC 323
consensus_1600#1      T-AGCACCTACGGATCNGTAAATCCCCTTGATAAGTGTAAAACCTTAACCTCGGTACACC 411
                      * ************** *** ******* ************ * *  ****** ******

consensus_1600#0      GAC-TGGATAACGCGCTTTGTAC-TGTACC-GACCACCGAAGTTGGAGCTTGTGTTCC-- 378
consensus_1600#1      GACGTGGATAACGCGCTTTGTACCTGTACCCGACCACCGAAGTTGGAGCTTGNGGTACCG 471
                      *** ******************* ****** ********************* * * *  

consensus_1600#0      GTGGTGGTGA--GGATGAGTTCGATT-TCGGCA-GCA--GCTGTGTGCTGAAGAATGGCA 432
consensus_1600#1      GTGGTGCTGACGGGATGAGTTCGATNCTCGGCNCGCAACGCTGTGGTCCTNGGAAGGAAA 531
                      ****** ***  *************  *****  ***  ******  *    *** *  *

consensus_1600#0      CCACGGGCAACTGCATGCCGGAATATGGTTGCGAGCGCACAATTAATGAGGCGAAAAGTG 492
consensus_1600#1      TGG--------------------------------------------------------- 534
                                                                                  

consensus_1600#0      TGCAAGACATTACGATTTGTGGGTTTGAGGGAACTGTCAGTTATGTTTGCTGCCCTATAG 552
consensus_1600#1      ------------------------------------------------------------
                                                                                  

consensus_1600#0      GTCATCAGGATTTTCTACCAATTCCCGAGATAGAGCATCCGTCCGNTGTTAGTTTGTTAC 612
consensus_1600#1      ------------------------------------------------------------
                                                                                  

consensus_1600#0      GTTCGCTACCGTACGAGAACGTCCGGCTCGTTGCCTTTGAGTGACTGACTAGATTGTAAG 672
consensus_1600#1      ------------------------------------------------------------
                                                                                  

consensus_1600#0      TCCGTGCGTACTTT 686
consensus_1600#1      --------------