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Anopheles gambiae
cluster # 1601 cluster # 1601       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1601#0 length = 520 sequences # 1  
consensus_1601#1 length = 519 sequences # 1  

consensusID : consensus_1601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 520
fasta sequence
                              [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA]

[+] EMBL AL933774             [AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA]


>consensus_1601#0 AATCGCCCGAGGNCAAGGAAAAACGAGAACAGTGCAGTGGACTCAAACCAGCGGGAGGAA ACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTAACGACTTA AGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACATGAGTTCAA AAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACA CACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATTTACAAGTT TCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAA GGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGGGGGAAGTAGGAAGTAATG AGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCTGATGTTAAGA GCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA



consensusID : consensus_1601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence
                              [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA]

[+] EMBL BM647982             [CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGGGGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTAACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAAGAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACACACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA]


>consensus_1601#1 CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGG GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTA ACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAA GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA CACACACATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATTTACA AGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTAGTAA AGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTAGGAA GTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCTGATG CTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1601#0      ------AATCGCCCGAGGNCAAGGAAAA-ACGAGAACAGTGCA-GTGGACTCAAACCAGC 52
consensus_1601#1      CCGCAAAACTAAAAACACACAAGGGAAACACGAGAGCAGTGCAAGTGGACTCAAACCAGG 60
                            **           ***** *** ****** ******* *************** 

consensus_1601#0      GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAAACAGAGCGCTACATCCTA 112
consensus_1601#1      GGGAGGAAACATACGCGCCCTATCATCAAGCAGGCTAGCTAACCAGGGCGCTACATCCTA 120
                      ****************************************** *** *************

consensus_1601#0      ACGACTTAAGCGTGTTTTGATTCTCCTTGTCGAGCCGCTTTCGACAATGCAAGTGCACAT 172
consensus_1601#1      ACGACTTGAGCGTGTTTTGATTCTCCTTTTCGAGCCGCTTTCGACAATGCAAGTGAACAA 180
                      ******* ******************** ************************** *** 

consensus_1601#0      GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 232
consensus_1601#1      GAGTTCAAAAGAACGTTAAGAGAAGAACGCAAAACATTGCTCTAGTTTATTATACACACA 240
                      ************************************************************

consensus_1601#0      CACACACACACATACTGACACATATATNAGTACACCCACATATATAAAAATACATATATT 292
consensus_1601#1      CACACAC----ATACTGACACATATATAAGTACACCCACATATATAAAAATACATATATT 296
                      *******    **************** ********************************

consensus_1601#0      TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 352
consensus_1601#1      TACAAGTTTCTTTACGCTTTTGTGAGGAAGAGGAGAGAGAGTGCCCGGTTATGATAAGTA 356
                      ************************************************************

consensus_1601#0      GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAACGGGGAGG--GGGAAGTA 410
consensus_1601#1      GTAAAGAAGGACAGGAATTAAGGACCGTATTAAACGAGCAAGCGGGGAGGTGGGGAAGTA 416
                      ***************************************** ********  ********

consensus_1601#0      GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGNATTTGCT 470
consensus_1601#1      GGAAGTAATGAGATAGGAAACAGCGAGTGTGTGGGATGCTAAGAGTGTACCGTATTTGCT 476
                      **************************************************** *******

consensus_1601#0      GATGTTAAGAGCTTTGCCATAAACGAAATGATGCCACAACCAAATGCGTA 520
consensus_1601#1      GATGCTAAGTGCTTTGCCATAAACGAAATGATGCCACAACCAA------- 519
                      **** **** *********************************       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)