cluster # 1602

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Anopheles gambiae
cluster # 1602 cluster # 1602 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1602#0 length = 725 sequences # 1

consensus_1602#1 length = 687 sequences # 1

consensusID : consensus_1602#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 725
fasta sequence

                              [TTCACGTATTGAACGAATAACAGTGATGGCTGCAGAACAATTACACTTTGTTATTTTAGGAGCTGGAATAAACGGATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAGTGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTGCCTAGAAGGAACGTCAGAATATGAATGTAGGAGTTGGGCACAGGAAACGCACAACTATTTCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTTGGTGCCTGTTATAGAATTATTTCATAGAGACACATCTTCTCCGTGGTGGCGAAATATTGTATTCGGATTTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGAATTATCGGAATAGCAAAAGCGTTGCGTTTATGTATACAACGTTTACCTGTGAGCCTTCGAAGATTATGAAATGTTACATTGACACTTTATCTAATCGAAATGTAAAATTTTATCAAAAACGATTGCAAAGTATCAATTGCCTGGAAATGTTAAACATACAGGCAAATGCAATCATTGTCAATTGTCTGGGATTGAATTCGCAACACGTTTTTAACGATCTTGAATTATTTCCTGTACGTGGTCAGGTTCAAAAAGTAAAGTCGAGTTCCGTATTTCATTCGTTTGCCAATGAATCATGTTACA]

[+] EMBL BX624122             [TTCACGTATTGAACGAATAACAGTGATGGCTGCAGAACAATTACACTTTGTTATTTTAGGAGCTGGAATAAACGGATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAGTGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTGCCTAGAAGGAACGTCAGAATATGAATGTAGGAGTTGGGCACAGGAAACGCACAACTATTTCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTTGGTGCCTGTTATAGAATTATTTCATAGAGACACATCTTCTCCGTGGTGGCGAAATATTGTATTCGGATTTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGAATTATCGGAATAGCAAAAGCGTTGCGTTTATGTATACAACGTTTACCTGTGAGCCTTCGAAGATTATGAAATGTTACATTGACACTTTATCTAATCGAAATGTAAAATTTTATCAAAAACGATTGCAAAGTATCAATTGCCTGGAAATGTTAAACATACAGGCAAATGCAATCATTGTCAATTGTCTGGGATTGAATTCGCAACACGTTTTTAACGATCTTGAATTATTTCCTGTACGTGGTCAGGTTCAAAAAGTAAAGTCGAGTTCCGTATTTCATTCGTTTGCCAATGAATCATGTTACA]




>consensus_1602#0
TTCACGTATTGAACGAATAACAGTGATGGCTGCAGAACAATTACACTTTGTTATTTTAGG
AGCTGGAATAAACGGATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAAC
AGTACATATTATTAGTGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACT
ATGGGGACCGTACTGCCTAGAAGGAACGTCAGAATATGAATGTAGGAGTTGGGCACAGGA
AACGCACAACTATTTCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTG
TTTGGTGCCTGTTATAGAATTATTTCATAGAGACACATCTTCTCCGTGGTGGCGAAATAT
TGTATTCGGATTTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAAC
GAATTATCGGAATAGCAAAAGCGTTGCGTTTATGTATACAACGTTTACCTGTGAGCCTTC
GAAGATTATGAAATGTTACATTGACACTTTATCTAATCGAAATGTAAAATTTTATCAAAA
ACGATTGCAAAGTATCAATTGCCTGGAAATGTTAAACATACAGGCAAATGCAATCATTGT
CAATTGTCTGGGATTGAATTCGCAACACGTTTTTAACGATCTTGAATTATTTCCTGTACG
TGGTCAGGTTCAAAAAGTAAAGTCGAGTTCCGTATTTCATTCGTTTGCCAATGAATCATG
TTACA

consensusID : consensus_1602#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [GCCCCGAGGTTATGTTTTGATACTACTGTAACAGTGTANTACTATTTCACGTATTGAACGAATAACAGTGATGGCTGCAGAACAATTACACTTGTTATTTTAGGAGCTGGAATAAACGGATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAGTGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTGCCTAGAAGGAACGTCAGAATATGANCTGTNGGAGTTGGGCACAGGAAACGCACAACTATTTCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTCAGGTGCCTGTTATAGAATTATTTCACTAGAGACACATCTTCTCCGTGGTGGCGCAAATATTGTATTCGGATTTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGCAATTATCGGAATAGCCAAAAGCGTTGCGTNTATCGTATACAACGTTTACCTAGGTGGAGCCTTCGAAGATTTATGACACANATGGTTTACCACTTGACACTTTTATNCTAAATCCGCACACATGCTAACACAANTTCTCAATCAACAAAAACGATTGCCAAGGTATCAAATTGGCCCTGGNACAACTGTTAACACACTACAGGGCCACAATGCCCAC]

[+] EMBL AL692980             [GCCCCGAGGTTATGTTTTGATACTACTGTAACAGTGTANTACTATTTCACGTATTGAACGAATAACAGTGATGGCTGCAGAACAATTACACTTGTTATTTTAGGAGCTGGAATAAACGGATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAGTGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTGCCTAGAAGGAACGTCAGAATATGANCTGTNGGAGTTGGGCACAGGAAACGCACAACTATTTCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTCAGGTGCCTGTTATAGAATTATTTCACTAGAGACACATCTTCTCCGTGGTGGCGCAAATATTGTATTCGGATTTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGCAATTATCGGAATAGCCAAAAGCGTTGCGTNTATCGTATACAACGTTTACCTAGGTGGAGCCTTCGAAGATTTATGACACANATGGTTTACCACTTGACACTTTTATNCTAAATCCGCACACATGCTAACACAANTTCTCAATCAACAAAAACGATTGCCAAGGTATCAAATTGGCCCTGGNACAACTGTTAACACACTACAGGGCCACAATGCCCAC]




>consensus_1602#1
GCCCCGAGGTTATGTTTTGATACTACTGTAACAGTGTANTACTATTTCACGTATTGAACG
AATAACAGTGATGGCTGCAGAACAATTACACTTGTTATTTTAGGAGCTGGAATAAACGGA
TTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAGT
GAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTGC
CTAGAAGGAACGTCAGAATATGANCTGTNGGAGTTGGGCACAGGAAACGCACAACTATTT
CCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTCAGGTGCCTGTTA
TAGAATTATTTCACTAGAGACACATCTTCTCCGTGGTGGCGCAAATATTGTATTCGGATT
TCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGCAATTATCGGA
ATAGCCAAAAGCGTTGCGTNTATCGTATACAACGTTTACCTAGGTGGAGCCTTCGAAGAT
TTATGACACANATGGTTTACCACTTGACACTTTTATNCTAAATCCGCACACATGCTAACA
CAANTTCTCAATCAACAAAAACGATTGCCAAGGTATCAAATTGGCCCTGGNACAACTGTT
AACACACTACAGGGCCACAATGCCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1602#0      ---------------------------------------------TTCACGTATTGAACG 15
consensus_1602#1      GCCCCGAGGTTATGTTTTGATACTACTGTAACAGTGTANTACTATTTCACGTATTGAACG 60
                                                                   ***************

consensus_1602#0      AATAACAGTGATGGCTGCAGAACAATTACACTTTGTTATTTTAGGAGCTGGAATAAACGG 75
consensus_1602#1      AATAACAGTGATGGCTGCAGAACAATTACACTT-GTTATTTTAGGAGCTGGAATAAACGG 119
                      ********************************* **************************

consensus_1602#0      ATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAG 135
consensus_1602#1      ATTGTCATGTGCGGTTCGTTTGTCACATGAATATCCTCGTTCAACAGTACATATTATTAG 179
                      ************************************************************

consensus_1602#0      TGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTG 195
consensus_1602#1      TGAACATTTTAGCCCCAATACTACTAGCGACGTTGCGGCTGGACTATGGGGACCGTACTG 239
                      ************************************************************

consensus_1602#0      CCTAGAAGGAACGTCAGAATATGAA-TGTAGGAGTTGGGCACAGGAAACGCACAACTATT 254
consensus_1602#1      CCTAGAAGGAACGTCAGAATATGANCTGTNGGAGTTGGGCACAGGAAACGCACAACTATT 299
                      ************************  *** ******************************

consensus_1602#0      TCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTT-GGTGCCTGTT 313
consensus_1602#1      TCCTACAGCTTTGGCAAGATGGATATGCTGATAAGTGCGGAATTTGTTCAGGTGCCTGTT 359
                      ************************************************  **********

consensus_1602#0      ATAGAATTATTTCA-TAGAGACACATCTTCTCCGTGGTGGCG-AAATATTGTATTCGGAT 371
consensus_1602#1      ATAGAATTATTTCACTAGAGACACATCTTCTCCGTGGTGGCGCAAATATTGTATTCGGAT 419
                      ************** *************************** *****************

consensus_1602#0      TTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACG-AATTATCGG 430
consensus_1602#1      TTCAAGAAATGTACCTAAGTTCTGATGATTTCGATCTCGCTCATCAAACGCAATTATCGG 479
                      ************************************************** *********

consensus_1602#0      AATAGC-AAAAGCGTTGCGTTTAT-GTATACAACGTTTACCTGTG---AGCCTTCGAAGA 485
consensus_1602#1      AATAGCCAAAAGCGTTGCGTNTATCGTATACAACGTTTACCTAGGTGGAGCCTTCGAAGA 539
                      ****** ************* *** *****************  *   ************

consensus_1602#0      TT-ATGAAATGTTACATTGACACTTTATCTAATCGAAATGTAAAATTTTATCAAAAACGA 544
consensus_1602#1      TTTATGACACANATGGTTTACCACTTGAC--ACTTTTATNCTAAATCCGCACACATGCTA 597
                      ** **** *       ** **   **  *  *     **   ****     ** *  * *

consensus_1602#0      TTGCAAAGTATCAATTGCCTGGAAATGTTAAACATACAGGCAAATGCAATCATTGTCAAT 604
consensus_1602#1      ACACAANTTCTCAATCAAC-AAAAACGATTGCCAAGGTATCAAATTGGCCCTGGNACAAC 656
                         ***  * *****   *   *** * *   **      *****     *     *** 

consensus_1602#0      TGTCTGGGATTGAATTCGCAACACGTTTTTAACGATCTTGAATTATTTCCTGTACGTGGT 664
consensus_1602#1      TGTT--------AACACACTACAGGGCCACAATGCCCAC--------------------- 687
                      ***         **  * * *** *     ** *  *                       

consensus_1602#0      CAGGTTCAAAAAGTAAAGTCGAGTTCCGTATTTCATTCGTTTGCCAATGAATCATGTTAC 724
consensus_1602#1      ------------------------------------------------------------
                                                                                  

consensus_1602#0      A 725
consensus_1602#1      -