These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 989 fasta sequence [AGAATCGGCACGAGGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGATCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTATATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGGTGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTACTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGAAGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAATGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGCTGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGTCAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCCGCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTGCNCTCACAACGAGTGGC] [+] EMBL BX467599 [AGAATCGGCACGAGGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGATCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTATATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGGTGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTACTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGAAGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAATGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGCTGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGTCAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCCGCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTGCNCTCACAACGAGTGGC] consensusID : consensus_1608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGAGAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGATCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG] [+] EMBL BM649504 [CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGAGAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACACTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATACACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGATCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTACGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATTTTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTGTTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAAGGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1608#0 -----------------------------------------------AGAATCGGCACGA 13 consensus_1608#1 CCGCTACTATTACTATTAGCAAGGATAGACAAACAGGGAACAAAACTAAAATCACTGTGA 60 * **** ** consensus_1608#0 GGAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACA 73 consensus_1608#1 GAAAGATTACTACATTGGTAGCACCTGCCTCAGTTGTCAGTTGTTTTGAAGGCAGACACA 120 * ********************************************************** consensus_1608#0 CTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATA 133 consensus_1608#1 CTTGCCTAAGGTGTAGTGCAAAACAATGTTTGCTAATGACACAATCAAAAACAAACAATA 180 ************************************************************ consensus_1608#0 CACCGGAGATACACGAGTGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAATGA 193 consensus_1608#1 CACCGGAGATACACGAGCGATCTCAACCGTTTAGGGAGGGCTTCCGTGCGTAATAAGTGA 240 ***************** ************************************** *** consensus_1608#0 TCGATTGTATTACCGTGTGACTGATCGAACAGTTGATGCGCAAACGCCAACGATTAATTA 253 consensus_1608#1 TCGATTGTATTACCGTGTGACTGATCGAACAGTTAATGCGCAAACGCCAACGATTAATTA 300 ********************************** ************************* consensus_1608#0 CGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATT 313 consensus_1608#1 CGCAAACACGTGGCCAATAGCCAACAAGTCTATCAGATTTCCATGATTGTATTCTAAATT 360 ************************************************************ consensus_1608#0 TTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTG 373 consensus_1608#1 TTCATTCTGACGAATGTAAAAGCCATTATATTGAGACGTCCACTTTGTTTGTGCATTTTG 420 ************************************************************ consensus_1608#0 TTCCTGTATGACTATA-GAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAA 432 consensus_1608#1 TTCCTGTATGACTATAAGAGACAGACTTAACGATGGCATCGTAACAGCTGTAGAAAGTAA 480 **************** ******************************************* consensus_1608#0 GGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTGATAGTAT 492 consensus_1608#1 GGTGAGCGCAAGGGATGTGGATCATTCGCCAGAACAGGTGCTATCTTCTACTG------- 533 ***************************************************** consensus_1608#0 ATCAGAAGTAGTCCGAGTGTACTTTAATGTCGGGGAAGGTTGTGATTTTTCTAACCCAGG 552 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 TGTACGAACAGTGAAGGTAGTGACAATGANTCATTATACACACACACAAAGTTAGGTTTA 612 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CTTTCCGAACCCTCTTTCGTACCTTACGGGGCAACCGGAAACGGTCTTGGAACTGGTGGA 672 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 AGAAAGGCGGCCTTTTGGTTGTCACACAGTCAGAATCTTATACCAAGTTTGACGNTNGAA 732 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 TGACAACANAANTGAGAGACAAGCANCAGGGGCATTGTTTTATGCGGGCCCNAGAAAAGC 792 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 TGTAGATTGCCCTTTTTAGTGGAAGGGGTTTAAGTTTTATGCCTGGGCACAATNGGCCGT 852 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CAGTTTANCAACGTCGTCTGCACTGGGAAAAACCCTGTGGGGTTACCAGAAGTTAGATCC 912 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 GCTCTGTAGGAACATCCCCTTTGACGCAGTGTGGTTTTATAACNAAAGGGCGCGNGTGTG 972 consensus_1608#1 ------------------------------------------------------------ consensus_1608#0 CNCTCACAACGAGTGGC 989 consensus_1608#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||