These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1626#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 790 fasta sequence [CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTGGGTGATGACTTAGTTGTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAACCCCCTCCACGGTGCGTNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGATGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTCCGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGCGCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGCCACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCANACACTTCACACACCAACANCTGNCCCTTCCAAAC] [+] EMBL AL693101 [CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTGGGTGATGACTTAGTTGTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAACCCCCTCCACGGTGCGTNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGATGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTCCGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGCGCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGCCACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCANACACTTCACACACCAACANCTGNCCCTTCCAAAC] consensusID : consensus_1626#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTTGTCCATCAACAACCCATACACCCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGGAGACGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCGTTGCGGGACAGGTCCTGTAGATAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAAAAGGTAAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGCTTGTTTAATTTTTCTCTAATTGTGTTTTGGGTGAGAGAGTGGGCGATGTTTTTTGTTTGATTTATTTGAGTGGGTAGGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGA] [+] EMBL BM581499 [CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAACAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTTGTCCATCAACAACCCATACACCCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGACACAACACCCATTTTGAACAGAAGCAGTGAGGAGACGTACGCGCGGTGTCCTCGCTGCCTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCGTTGCGGGACAGGTCCTGTAGATAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCGAGAAAAAAGGTAAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAGCTCGAGCTTGTTTAATTTTTCTCTAATTGTGTTTTGGGTGAGAGAGTGGGCGATGTTTTTTGTTTGATTTATTTGAGTGGGTAGGGAAAAAACCGGGACACGCGATACGCGCGATTGTACATCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1626#0 ------------------------------------------------------------ consensus_1626#1 CCGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 60 consensus_1626#0 -----------------CAGAATNGCCCGAGGTTANAGTGAAAATCGAAACAGTGCGGAA 43 consensus_1626#1 AGATAGAAACGAGGGACCAAGAAACGACAATGTGTTAGTGAAAATCGAAACAGTGCGGAA 120 ** * * * ** ************************ consensus_1626#0 CAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGATGCTG-----GGTGATGACTTAGTT 98 consensus_1626#1 CAGAGACTCTCCTGGCTGGCGGGTGGTGGTGGTGGTGGTGATGCTGGGGATGACTTAGTT 180 ********************************** ** ** ** ************ consensus_1626#0 GTTCATCAACATCCCACACGCACTCCCCCGCCCCCTTGTGACGAGCAGCAGCTATTCCGA 158 consensus_1626#1 GTCCATCAACAACCCATACAC---CCCCCATCCCCCTTGGACGAGCAGCAGCTATTCCGA 237 ** ******** **** ** * ***** **** * ********************* consensus_1626#0 CACAACACCCATTTTGAACAGAAGCAGTGAGTGAGACTGTACGCGCGGTGTCCTCGCTGC 218 consensus_1626#1 CACAACACCCATTTTGAACAGAAGCAGTGAG-GAGAC-GTACGCGCGGTGTCCTCGCTGC 295 ******************************* ***** ********************** consensus_1626#0 CTAGTTCTGGATCCAACTGTGATATATTTGATCCCAATTTAA--CCCCCTCCACGGTGCG 276 consensus_1626#1 CTAGTTCTGGATCCAACTGTGATATATTTGATCCCAACTTTAACCCCCCTCCACGGTGCG 355 ************************************* ** * **************** consensus_1626#0 TNTGCGGGACAGGTCCTGTAGATAAGTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCG 336 consensus_1626#1 TT-GCGGGACAGGTCCTGTAGATA-GTCCTCCATCGTGGGCCCGGGTGAGTTGTTTGGCG 413 * ********************* *********************************** consensus_1626#0 AGAAAACAAGGGTANAAAGCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAG 396 consensus_1626#1 AGAAA--AAAGGTAAAA-GCAAGAGCTCCATCCTACTACGCAGCGGCGCTTTATTTTGAG 470 ***** ** **** ** ****************************************** consensus_1626#0 CTCGAGGCTTGTTTAATATTATTCTCTAATTTGTGTACAAAGGGTGAGAGAGTGGAGCGA 456 consensus_1626#1 CTCGAG-CTTGTTTAATTTT--TCTCTAATT---GTGTTTTGGGTGAGAGAGTGG-GCGA 523 ****** ********** ** ********* ** ************** **** consensus_1626#0 TGTAATAACAAGTTCTGATTCTATTTGGCGGGTGAGGTGCGCGGAAAAAACCGGGACACG 516 consensus_1626#1 TGTTTTTT----GTTTGATTTATTTGAGTGGGTAGGG-------AAAAAACCGGGACACG 572 *** * * ***** ** * **** ** **************** consensus_1626#0 CGATACGCGCGATTGTACATCGCGGAGCAGTANCGCACCAGCGGGATTACTTGCTTGCTC 576 consensus_1626#1 CGATACGCGCGATTGTACATCGA------------------------------------- 595 ********************** consensus_1626#0 CGCAGTACGCAANCCGTTTGGGCGAGCGAAAGTTNAAAAAGCACGCCAACACGCCTCAGC 636 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 GCCAAATTGCCAACCTTGTTAAAGGAAGTCTGTTGCAAGCCCCTTNTAACGTTGTTGGGC 696 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 CACTATGGCNCAACGCGAAAGCAGCACTTCACGCACANAGCGCCATTCTCTCACTNCCAN 756 consensus_1626#1 ------------------------------------------------------------ consensus_1626#0 ACACTTCACACACCAACANCTGNCCCTTCCAAAC 790 consensus_1626#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||