These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 930 fasta sequence [CAAGAATCCCCGAGGTTAAATGTACAGCGCAGTTGACATGTAATACACAGGTTTGTTTTGTGTGGCCCGAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAGTGAACCACTCGGACCTGCGTGCAAAAAGAGCCAAAGAATCAAATAAAATTGCTGCCGAAACTGTGNGAAGCGTGAGTGAGTGTGCTTGTATCTTCTCGATGTCTACGAATCAGCACTGCTGCAATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACCTGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGTACAAAGCAACATGGAATCTGCTAGCAGAAAACCTACTTGAGTAAACCCCGGCATAAAAGGTTGCTTAAACGTGAAAGTCAACACAANATACCTGGATACAGCAGCCAGTGTAAGGAACGTACCCGTAGAATCGNTTGGGACAGGANACGCAACTGAACGGAAAGGNAAATACCGTGCCAGAAGGNACGGCTGCATGAACACACTGGCAANGGCTACGAAACGGCGCTTGCAAGCATTGAGAATAACGATAGCGGAACAGAGCATCGTACACTGGACATTATCCACAACACCCGAGGAAACAACAACCTACANNGCAAGTACCTTTAACCACACCGAACCGGAGTCCGCGGGCAACTTTCACCTTNGNCACGNGGCNGAAGCTCCAGNACAGCNTGGACTTATGCCGNGCCGGTTGGNATTCTGAGGCCGAATTGGTGTTGGGCAACAACTAGCGATACACCTTAACCCGGCGATTGCACGCACCGGGCAAGAANGCACCGNACCTTGCCGGCAGGGTATATNNCAAAATNGCGAGCGCNANTAAATGGAGAGATCACTCATCTTTGACCACACTCAGAAAAACCCGTTAACAAT] [+] EMBL AL693119 [CAAGAATCCCCGAGGTTAAATGTACAGCGCAGTTGACATGTAATACACAGGTTTGTTTTGTGTGGCCCGAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAGTGAACCACTCGGACCTGCGTGCAAAAAGAGCCAAAGAATCAAATAAAATTGCTGCCGAAACTGTGNGAAGCGTGAGTGAGTGTGCTTGTATCTTCTCGATGTCTACGAATCAGCACTGCTGCAATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACCTGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGTACAAAGCAACATGGAATCTGCTAGCAGAAAACCTACTTGAGTAAACCCCGGCATAAAAGGTTGCTTAAACGTGAAAGTCAACACAANATACCTGGATACAGCAGCCAGTGTAAGGAACGTACCCGTAGAATCGNTTGGGACAGGANACGCAACTGAACGGAAAGGNAAATACCGTGCCAGAAGGNACGGCTGCATGAACACACTGGCAANGGCTACGAAACGGCGCTTGCAAGCATTGAGAATAACGATAGCGGAACAGAGCATCGTACACTGGACATTATCCACAACACCCGAGGAAACAACAACCTACANNGCAAGTACCTTTAACCACACCGAACCGGAGTCCGCGGGCAACTTTCACCTTNGNCACGNGGCNGAAGCTCCAGNACAGCNTGGACTTATGCCGNGCCGGTTGGNATTCTGAGGCCGAATTGGTGTTGGGCAACAACTAGCGATACACCTTAACCCGGCGATTGCACGCACCGGGCAAGAANGCACCGNACCTTGCCGGCAGGGTATATNNCAAAATNGCGAGCGCNANTAAATGGAGAGATCACTCATCTTTGACCACACTCAGAAAAACCCGTTAACAAT] consensusID : consensus_1629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [AATGTAAACACACAGGTTTGTTTTGTGTGGCCCCGAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAGGAACCACTCGGACCAGCGGCAAAAAGAGCCAAAGAATCAAATAAAATTGCGCCGAAACTGTGGAAGCGTGAGGAGGTGCTTGTTCTTCTCGATGTCTACGAATCAGCACTGCTGCAATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACCTGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGTCAAAGCAAATGGAATCTGCTGCAAAAAACCTACTTGGCTAACCCCGGCATAAAAGGTGCTTTTTTCGTGAAAGTCAAACAAATACTGGATACAGCAGCCAGTGTAGAGGAACGTACCGTAGAATCGTTGGAAGAAGAAATGAAGGAAGAAATACGTGCAGAGGAGGCTGAGAACACATGCAAGGTAGAACGGCTTGAAGATGAGATAGTAGCGGAAGAGATCGTCATGGAATTTCCACACACCGAGGAACACACTACGAATTCTTTAACCACCGAACGAGTCGCGGAATTACTTGCAG] [+] EMBL BX628120 [AATGTAAACACACAGGTTTGTTTTGTGTGGCCCCGAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAGGAACCACTCGGACCAGCGGCAAAAAGAGCCAAAGAATCAAATAAAATTGCGCCGAAACTGTGGAAGCGTGAGGAGGTGCTTGTTCTTCTCGATGTCTACGAATCAGCACTGCTGCAATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACCTGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGTCAAAGCAAATGGAATCTGCTGCAAAAAACCTACTTGGCTAACCCCGGCATAAAAGGTGCTTTTTTCGTGAAAGTCAAACAAATACTGGATACAGCAGCCAGTGTAGAGGAACGTACCGTAGAATCGTTGGAAGAAGAAATGAAGGAAGAAATACGTGCAGAGGAGGCTGAGAACACATGCAAGGTAGAACGGCTTGAAGATGAGATAGTAGCGGAAGAGATCGTCATGGAATTTCCACACACCGAGGAACACACTACGAATTCTTTAACCACCGAACGAGTCGCGGAATTACTTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1629#0 CAAGAATCCCCGAGGTTAAATGTACAGCGCAGTTGACATGTAA-TACACAGGTTTGTTTT 59 consensus_1629#1 ------------------------------------AATGTAAACACACAGGTTTGTTTT 24 ****** *************** consensus_1629#0 GTGTGGCCC-GAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAGTG 118 consensus_1629#1 GTGTGGCCCCGAATTTAACGAATTATTCCAAAAAGAGCCAACAATGAAGAGAAATAAG-G 83 ********* ************************************************ * consensus_1629#0 AACCACTCGGACCTGCGTGCAAAAAGAGCCAAAGAATCAAATAAAATTGCTGCCGAAACT 178 consensus_1629#1 AACCACTCGGACCAGCG-GCAAAAAGAGCCAAAGAATCAAATAAAATTGC-GCCGAAACT 141 ************* *** ******************************** ********* consensus_1629#0 GTGNGAAGCGTGAGTGAGTGTGCTTGTATCTTCTCGATGTCTACGAATCAGCACTGCTGC 238 consensus_1629#1 GTGG-AAGCGTGAG-GAG-GTGCTTGT-TCTTCTCGATGTCTACGAATCAGCACTGCTGC 197 *** ********* *** ******** ******************************** consensus_1629#0 AATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACC 298 consensus_1629#1 AATTGATCAATCGTACGATTGAAACCGAAGATGATTTGTGGATTACGGTGTCGGAAAACC 257 ************************************************************ consensus_1629#0 TGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGTACAAAGCAACATGGAATCTGCT 358 consensus_1629#1 TGTACGATCAGGGCATAGACGCTTCTGCAGTTCGTTGT-CAAAGCAA-ATGGAATCTGCT 315 ************************************** ******** ************ consensus_1629#0 AGCAGAAAACCTACTTGAGTAAACCCCGGCATAAAAGGTTGCTTAAACGTGAAAGTCAAC 418 consensus_1629#1 -GCAAAAAACCTACTTG-GCTAACCCCGGCATAAAAGGTGCTTTTTTCGTGAAAGTCAAA 373 *** ************ * ****************** ** ************ consensus_1629#0 ACAANATACCTGGATACAGCAGCCAGTGTA-AGGAACGTACCCGTAGAATCGNTTGGGAC 477 consensus_1629#1 CAAATA---CTGGATACAGCAGCCAGTGTAGAGGAACGTACC-GTAGAATCGTTGGA--- 426 ** * ********************* *********** ********* * * consensus_1629#0 AGGANACGCAACTGAACGGAAAGGNAAATACCGTGCCAGAAGGNACGGCTGCATGAACAC 537 consensus_1629#1 AGAAGA--------AATGAAGGAAGAAATAC-GTGC-AGAGGAGGC-------TGAGAAC 469 ** * * ** * * ****** **** *** * * *** ** consensus_1629#0 ACTGGCAANGGCTACGAAACGGCGCTTGCAAGCATTGAGAATAACGATAGCGGAACAGAG 597 consensus_1629#1 ACATGCAAGG----TAGAACGGC--TTGAAGA---TGAGA----TAGTAGCGGAAGAGAT 516 ** **** * ****** *** * ***** ******** *** consensus_1629#0 CATCGTACACTGGACATTATCCACAACACCCGAGGAAACAACAACCTACANNGCAAGTAC 657 consensus_1629#1 CGTCAT-----GGAATTTCCACACA----CCGAGGAA---------CACACTACGAAT-T 557 * ** * *** ** **** ******** *** * * * consensus_1629#0 CTTTAACCACACCGAACCGGAGTCCGCGGGCAACTTTCACCTTNGNCACGNGGCNGAAGC 717 consensus_1629#1 CTTTAACCA--CCGAAC--GAGTCGCGGAATTACTTGCAG-------------------- 593 ********* ****** ***** * **** ** consensus_1629#0 TCCAGNACAGCNTGGACTTATGCCGNGCCGGTTGGNATTCTGAGGCCGAATTGGTGTTGG 777 consensus_1629#1 ------------------------------------------------------------ consensus_1629#0 GCAACAACTAGCGATACACCTTAACCCGGCGATTGCACGCACCGGGCAAGAANGCACCGN 837 consensus_1629#1 ------------------------------------------------------------ consensus_1629#0 ACCTTGCCGGCAGGGTATATNNCAAAATNGCGAGCGCNANTAAATGGAGAGATCACTCAT 897 consensus_1629#1 ------------------------------------------------------------ consensus_1629#0 CTTTGACCACACTCAGAAAAACCCGTTAACAAT 930 consensus_1629#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||