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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1025 fasta sequence
[GATCCCCCGNGGTTNTCTTCTGAATACACAACAGTGATTATATACCCATACAAAGAGGAAGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTGGATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTTCGTATAACCGGAACGGTGACGCATATTCGGATGGCTATCAACCAAAACACAACCGATATACGTACGTATCCAAAGCTACTGGGAATGGTGCGCAGTAGTTCAGCTACTTGCCTTGACGTAGTAGCTGCTTGAGGCAATTTGCTTGCTCCAAACGACGTCAACAAATGGTGATGCAAACTTTCACCGACGGCTCCGNAACTATCAGNAAAAAATTNGCGAACTACATCCGATAGAGAACCTGCATCGTGGGACGGACTCAACATCAGATGCGACGACCAAGCCAAGCAAAATTTCGAGGACCCNCAACGNCAACCNGGCCAAAGACCAGNCACNNAANACANTGAACNCCAAAAAGNCAAAGANACCCCACGACAACNAGCNAGNCNCNGNACGGACGCNGCANAANGCCGNCANCCCGCNGCGACAACCAGGNNAGNANAACGNGACAATACGGCCCACCGACACAAGCAACTGCAACACGGGCCGAACATGCCANCCTGGCACNGATGGCAAAAACCAACAAAATCCCCCCCCCNATCGGGCCGNCATCAAAGGCCACCNAGGCACAATCCAAACATGACCTGGCGGCANAGCCCAACCAAACCTGGGAAATCCACCCNCCAGAACNCAANGAAGCGCANCNNTATCAGCNNCACTGGCGCACTAGCANAGCTAACCAACAAGCACANACCCATATGAANNTCGCNAACGGNANCNACCANTATAAATTCANAGACGAACAACANAAAGTANCNTGCAAAACCGCGAGGCAACGTNCCANGGANGCAAGGGCGTGGCAGCGAANAAGCAAGANAANAAGACCAACTCNCGGCAAACCAANAACAAATTCGACACAACCGCGANAA]
[+] EMBL AL693138 [GATCCCCCGNGGTTNTCTTCTGAATACACAACAGTGATTATATACCCATACAAAGAGGAAGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTGGATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTTCGTATAACCGGAACGGTGACGCATATTCGGATGGCTATCAACCAAAACACAACCGATATACGTACGTATCCAAAGCTACTGGGAATGGTGCGCAGTAGTTCAGCTACTTGCCTTGACGTAGTAGCTGCTTGAGGCAATTTGCTTGCTCCAAACGACGTCAACAAATGGTGATGCAAACTTTCACCGACGGCTCCGNAACTATCAGNAAAAAATTNGCGAACTACATCCGATAGAGAACCTGCATCGTGGGACGGACTCAACATCAGATGCGACGACCAAGCCAAGCAAAATTTCGAGGACCCNCAACGNCAACCNGGCCAAAGACCAGNCACNNAANACANTGAACNCCAAAAAGNCAAAGANACCCCACGACAACNAGCNAGNCNCNGNACGGACGCNGCANAANGCCGNCANCCCGCNGCGACAACCAGGNNAGNANAACGNGACAATACGGCCCACCGACACAAGCAACTGCAACACGGGCCGAACATGCCANCCTGGCACNGATGGCAAAAACCAACAAAATCCCCCCCCCNATCGGGCCGNCATCAAAGGCCACCNAGGCACAATCCAAACATGACCTGGCGGCANAGCCCAACCAAACCTGGGAAATCCACCCNCCAGAACNCAANGAAGCGCANCNNTATCAGCNNCACTGGCGCACTAGCANAGCTAACCAACAAGCACANACCCATATGAANNTCGCNAACGGNANCNACCANTATAAATTCANAGACGAACAACANAAAGTANCNTGCAAAACCGCGAGGCAACGTNCCANGGANGCAAGGGCGTGGCAGCGAANAAGCAAGANAANAAGACCAACTCNCGGCAAACCAANAACAAATTCGACACAACCGCGANAA]
consensusID : consensus_1633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGTACTTTTCTTCTGAATACACAACAGTGATTATTATACCCATACAAAGAGGAAGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTGGATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTTTCGTATTCCGGAACGGTGACGCATATTCGGATGGCTATCAACCAAAACACAACCGATTCGTCGTTCCAAAGCTCTGGGAATGGTGGCAGTAGTTCAGCTACTGCCTTGCGTGTGCTGCTTGAGCAATTGCTGCTCCAAAGCGTCAACAATGGTGATGCAAACTTTCTCACCGAGGTCGAATATCAGAAAATTTGCGAATACATCGTGGTCCTGCTCGTGGGCGATCAAATCGATGCGACGACCAAGCAAGAAATTCGCAGCCTTCGTTCGCTAGCCGACAAAATTACCAAGCAATTCCAGCAGCTGATTGAGCGGAAGGCGTTCCGCGAACTGGTGAAGGATTGCCTCGAAAAGATGTACACGGCCGATGCACTGTCGGTGAAAAAACTCCCCTCGCCGTTTGCCACGATCATGCTGGCGCTCATGGATCCCCAACAGGGCGTTGCGTGGATTCTTTCCAAGAACATGATCGACGAACATATCAGAAAAATTCTCACCGTTTTCATTGACTGGCTGTGTAAGATA]
[+] EMBL BM593449 [CCGTACTTTTCTTCTGAATACACAACAGTGATTATTATACCCATACAAAGAGGAAGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTGGATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTTTCGTATTCCGGAACGGTGACGCATATTCGGATGGCTATCAACCAAAACACAACCGATTCGTCGTTCCAAAGCTCTGGGAATGGTGGCAGTAGTTCAGCTACTGCCTTGCGTGTGCTGCTTGAGCAATTGCTGCTCCAAAGCGTCAACAATGGTGATGCAAACTTTCTCACCGAGGTCGAATATCAGAAAATTTGCGAATACATCGTGGTCCTGCTCGTGGGCGATCAAATCGATGCGACGACCAAGCAAGAAATTCGCAGCCTTCGTTCGCTAGCCGACAAAATTACCAAGCAATTCCAGCAGCTGATTGAGCGGAAGGCGTTCCGCGAACTGGTGAAGGATTGCCTCGAAAAGATGTACACGGCCGATGCACTGTCGGTGAAAAAACTCCCCTCGCCGTTTGCCACGATCATGCTGGCGCTCATGGATCCCCAACAGGGCGTTGCGTGGATTCTTTCCAAGAACATGATCGACGAACATATCAGAAAAATTCTCACCGTTTTCATTGACTGGCTGTGTAAGATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1633#0 GATCCCCCGNGGTTNTCTTCTGAATACACAACAGTGATTAT-ATACCCATACAAAGAGGA 59
consensus_1633#1 ------CCGTACTTTTCTTCTGAATACACAACAGTGATTATTATACCCATACAAAGAGGA 54
*** ** ************************** ******************
consensus_1633#0 AGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTG 119
consensus_1633#1 AGGTCGCAGCAGAAGCAGTAAATTGATTAGTTTTATTTGGTGGCATACTTTGGTGTGGTG 114
************************************************************
consensus_1633#0 GATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTT-CGTATAACCGGAACGGTGA 178
consensus_1633#1 GATCGCATTCGCAGCTATCCCTATTATTGCTCCGTAATTTTCGTATT-CCGGAACGGTGA 173
**************************************** ***** ************
consensus_1633#0 CGCATATTCGGATGGCTATCAACCAAAACACAACCGATATACGTACGTATCCAAAGCTAC 238
consensus_1633#1 CGCATATTCGGATGGCTATCAACCAAAACACAACCGATTCGT---CGT-TCCAAAGCT-C 228
************************************** *** ********* *
consensus_1633#0 TGGGAATGGTGCGCAGTAGTTCAGCTACTTGCCTTGACGTAGTAGCTGCTTGAGGCAATT 298
consensus_1633#1 TGGGAATGGTG-GCAGTAGTTCAGCTACT-GCCTTG-CGTGT--GCTGCTTGAG-CAATT 282
*********** ***************** ****** *** ********** *****
consensus_1633#0 TGCTTGCTCCAAACGACGTCAACAAATGGTGATGCAAACTTTCACCGACGGCTCCGNAAC 358
consensus_1633#1 --GCTGCTCCAAA--GCGTCAACAA-TGGTGATGCAAACTTTC-TCACCGAGGTCGAA-- 334
********* ********* ***************** * ** ** *
consensus_1633#0 TATCAGNAAAAAATTNGCGAACTACATCCGATAGAGAACCTGCATCGTGGGACGGACTCA 418
consensus_1633#1 TATCAGAAAA---TTTGCGAA-TACATC-----GTGGTCCTGC-TCGTGGG-CGA--TCA 381
****** *** ** ***** ****** * * ***** ******* ** ***
consensus_1633#0 ACATCAGATGCGACGACCAAGCCAAGCAAAATTTCGAGGACCCNCAACGNCAACCNGGCC 478
consensus_1633#1 A-ATC-GATGCGACGACCAAGC----AAGAAATTCGCAGCCTTCGTTCGCTAGCCGACAA 435
* *** **************** * ** **** * * ** * **
consensus_1633#0 AAAGACCAGNCACNNAANACANTGAACNCCAAAAAGNCAAAGANACCCCACGACAACNAG 538
consensus_1633#1 AATTACCAAGCAATTCCAGCAGCTGATT-----GAGCGGAAGGCGTTCCGCGAACTGGTG 490
** **** ** ** * ** *** ** *** *
consensus_1633#0 CNAGNCNCNGNACGGACGCNGCANAANGCCGNCANCCCGCNGC---GACAACCAGGNNAG 595
consensus_1633#1 AAGGATTGCCTCGAAAAGATGTACACGGCCGATGCACTGTCGGTGAAAAAACTCCCCTCG 550
* * * * * * **** * * * * *** *
consensus_1633#0 NANAACGNGACAATACGGCCCACCGACACAAGCAACTGCAACACGGGCCGAACATGCCAN 655
consensus_1633#1 CCGTTTGCCACGATCATGCTGGC--GCTCATGGATCCCCAACA-GGGCGTTGCGTGGATT 607
* ** ** ** * * ** * * * ***** **** * **
consensus_1633#0 CCTGGCACNGATGGCAAAAACCAACAAAATCCCCCCCCCNATCGGGCCGNCATCAAAGGC 715
consensus_1633#1 CTTT---CCAAGAACATGATCGACGAACATATCAGAAAAATTCTCACCGTTTTCATTGAC 664
* * * * ** * * * ** ** * ** *** *** * *
consensus_1633#0 CACCNAGGCACAATCCAAACATGACCTGGCGGCANAGCCCAACCAAACCTGGGAAATCCA 775
consensus_1633#1 TGGCTGTGTAAGATA--------------------------------------------- 679
* * * **
consensus_1633#0 CCCNCCAGAACNCAANGAAGCGCANCNNTATCAGCNNCACTGGCGCACTAGCANAGCTAA 835
consensus_1633#1 ------------------------------------------------------------
consensus_1633#0 CCAACAAGCACANACCCATATGAANNTCGCNAACGGNANCNACCANTATAAATTCANAGA 895
consensus_1633#1 ------------------------------------------------------------
consensus_1633#0 CGAACAACANAAAGTANCNTGCAAAACCGCGAGGCAACGTNCCANGGANGCAAGGGCGTG 955
consensus_1633#1 ------------------------------------------------------------
consensus_1633#0 GCAGCGAANAAGCAAGANAANAAGACCAACTCNCGGCAAACCAANAACAAATTCGACACA 1015
consensus_1633#1 ------------------------------------------------------------
consensus_1633#0 ACCGCGANAA 1025
consensus_1633#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||