cluster # 1638

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Anopheles gambiae
cluster # 1638 cluster # 1638 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1638#0 length = 534 sequences # 1

consensus_1638#1 length = 165 sequences # 1

consensusID : consensus_1638#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [GCACGAATCGCACGAGGTGGNNGCGTGGAGATTATCATTATCGCACCACCTTCGAAATGATGGGTGATAAAACGCACGTGCCCCAACCACACCGGCCATTGTTGCTCCCTATACCTTTATATCGTCGAGTCTGTATTCCGTAGCTCATCTCGCGCATCTGTCCCTGCACGCCGGCAAGTGACACTCCACACCCCGGNCCCGGTTGGGTCGGTTTCGCTCAGCGGCAGATGGCACCGTTCGTACATTGGCACCACCAGCACCATCGCCACCGCCCTCCATACTGCTCTGTCGCTGCACGAAACAGATACTCGGTACGCTGCGGACTGATCTCATCGGAACGAGCTGACGGACGCACTGCCGCCAGCACCAATTTCCTGGCACGGCCGGACGCTCAANTCAGCATCCACCATCGTGACGCCCCGGATACGCTCCGTTCNGNGCACAAGCGTCGAATCGCCAAAACCCGANATACACGCCGATGCACCGGATTAAGCCCGTATGTTGNANTCTGGGTCACCGAAANGGGAGGCAATT]

[+] EMBL BX469202             [GCACGAATCGCACGAGGTGGNNGCGTGGAGATTATCATTATCGCACCACCTTCGAAATGATGGGTGATAAAACGCACGTGCCCCAACCACACCGGCCATTGTTGCTCCCTATACCTTTATATCGTCGAGTCTGTATTCCGTAGCTCATCTCGCGCATCTGTCCCTGCACGCCGGCAAGTGACACTCCACACCCCGGNCCCGGTTGGGTCGGTTTCGCTCAGCGGCAGATGGCACCGTTCGTACATTGGCACCACCAGCACCATCGCCACCGCCCTCCATACTGCTCTGTCGCTGCACGAAACAGATACTCGGTACGCTGCGGACTGATCTCATCGGAACGAGCTGACGGACGCACTGCCGCCAGCACCAATTTCCTGGCACGGCCGGACGCTCAANTCAGCATCCACCATCGTGACGCCCCGGATACGCTCCGTTCNGNGCACAAGCGTCGAATCGCCAAAACCCGANATACACGCCGATGCACCGGATTAAGCCCGTATGTTGNANTCTGGGTCACCGAAANGGGAGGCAATT]




>consensus_1638#0
GCACGAATCGCACGAGGTGGNNGCGTGGAGATTATCATTATCGCACCACCTTCGAAATGA
TGGGTGATAAAACGCACGTGCCCCAACCACACCGGCCATTGTTGCTCCCTATACCTTTAT
ATCGTCGAGTCTGTATTCCGTAGCTCATCTCGCGCATCTGTCCCTGCACGCCGGCAAGTG
ACACTCCACACCCCGGNCCCGGTTGGGTCGGTTTCGCTCAGCGGCAGATGGCACCGTTCG
TACATTGGCACCACCAGCACCATCGCCACCGCCCTCCATACTGCTCTGTCGCTGCACGAA
ACAGATACTCGGTACGCTGCGGACTGATCTCATCGGAACGAGCTGACGGACGCACTGCCG
CCAGCACCAATTTCCTGGCACGGCCGGACGCTCAANTCAGCATCCACCATCGTGACGCCC
CGGATACGCTCCGTTCNGNGCACAAGCGTCGAATCGCCAAAACCCGANATACACGCCGAT
GCACCGGATTAAGCCCGTATGTTGNANTCTGGGTCACCGAAANGGGAGGCAATT

consensusID : consensus_1638#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 165
fasta sequence

                              [AAACAGGACTCGGTACGCTGCGGACGGATCTCATCGAACGAGCTGACGGACGCACGGCCGCCAGCACCAATTTCCGGCACGGCCGGACGCTCAATCACATCCACCATCGGGACGCCCCGGAAACGCTCCGGTCCGCGCACAAGCGGCAAGCGCCAAAACCCGCCA]

[+] EMBL BX615883             [AAACAGGACTCGGTACGCTGCGGACGGATCTCATCGAACGAGCTGACGGACGCACGGCCGCCAGCACCAATTTCCGGCACGGCCGGACGCTCAATCACATCCACCATCGGGACGCCCCGGAAACGCTCCGGTCCGCGCACAAGCGGCAAGCGCCAAAACCCGCCA]




>consensus_1638#1
AAACAGGACTCGGTACGCTGCGGACGGATCTCATCGAACGAGCTGACGGACGCACGGCCG
CCAGCACCAATTTCCGGCACGGCCGGACGCTCAATCACATCCACCATCGGGACGCCCCGG
AAACGCTCCGGTCCGCGCACAAGCGGCAAGCGCCAAAACCCGCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1638#0      GCACGAATCGCACGAGGTGGNNGCGTGGAGATTATCATTATCGCACCACCTTCGAAATGA 60
consensus_1638#1      ------------------------------------------------------------
                                                                                  

consensus_1638#0      TGGGTGATAAAACGCACGTGCCCCAACCACACCGGCCATTGTTGCTCCCTATACCTTTAT 120
consensus_1638#1      ------------------------------------------------------------
                                                                                  

consensus_1638#0      ATCGTCGAGTCTGTATTCCGTAGCTCATCTCGCGCATCTGTCCCTGCACGCCGGCAAGTG 180
consensus_1638#1      ------------------------------------------------------------
                                                                                  

consensus_1638#0      ACACTCCACACCCCGGNCCCGGTTGGGTCGGTTTCGCTCAGCGGCAGATGGCACCGTTCG 240
consensus_1638#1      ------------------------------------------------------------
                                                                                  

consensus_1638#0      TACATTGGCACCACCAGCACCATCGCCACCGCCCTCCATACTGCTCTGTCGCTGCACGAA 300
consensus_1638#1      ----------------------------------------------------------AA 2
                                                                                **

consensus_1638#0      ACAGATACTCGGTACGCTGCGGACTGATCTCATCGGAACGAGCTGACGGACGCACTGCCG 360
consensus_1638#1      ACAGG-ACTCGGTACGCTGCGGACGGATCTCATCG-AACGAGCTGACGGACGCACGGCCG 60
                      ****  ****************** ********** ******************* ****

consensus_1638#0      CCAGCACCAATTTCCTGGCACGGCCGGACGCTCAANTCAGCATCCACCATCGTGACGCCC 420
consensus_1638#1      CCAGCACCAATTTCC-GGCACGGCCGGACGCTCAATC--ACATCCACCATCGGGACGCCC 117
                      *************** *******************     ************ *******

consensus_1638#0      CGGATACGCTCCGTTCNGNGCACAAGCGTCGAATCGCCAAAACCCGANATACACGCCGAT 480
consensus_1638#1      CGGAAACGCTCCGGTCCGCGCACAAGCGGC-AAGCGCCAAAACCCGCCA----------- 165
                      **** ******** ** * ********* * ** ************  *           

consensus_1638#0      GCACCGGATTAAGCCCGTATGTTGNANTCTGGGTCACCGAAANGGGAGGCAATT 534
consensus_1638#1      ------------------------------------------------------