These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGTTCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCT] [+] EMBL BM608284 [CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGTTCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCT] consensusID : consensus_1641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [CCGACCGCCACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGAAGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCTTG] [+] EMBL BM576094 [CCGACCGCCACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGAAGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGGAGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACATGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGCGCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGGACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAAAGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCGAAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCAAACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTACGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGACTCCCAGAAGCTTCGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1641#0 CCGCTGGACGCGAAACGCAAACACCGGAACGGGATCGGTTGCCACATTACGGTCCACGGT 60 consensus_1641#1 ---CCGACCGC----CACCGGGTCTGAAGGAAACGCGTAAACCGTCCCGTGGTGTACTGA 53 * * *** * * * * * ** ** *** ** * consensus_1641#0 TCTCGACAAGCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGG 120 consensus_1641#1 AGACACCCATCAACCAAGCGGACACGGAGCTCCGTTCGCCGCGTGCGAAGCTGCTGTGGG 113 * * * ************************************************** consensus_1641#0 AGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACA 180 consensus_1641#1 AGAAGTGGCGCTACGTGTGGATGCTGGCATGGGAACGCCAGCGGCGCCTGCACGACCACA 173 ************************************************************ consensus_1641#0 TGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGC 240 consensus_1641#1 TGCTCTACCTGCAGGATGTGGAGCGCGTCCGGCAGTTCAGCTGGGAGGAGTGGCGCAAGC 233 ************************************************************ consensus_1641#0 GCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGG 300 consensus_1641#1 GCTTCCTCAAGTTCATGAACCACAAGAAGTCCCGCCTGACGGATCTGTTCCGCAAGATGG 293 ************************************************************ consensus_1641#0 ACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAA 360 consensus_1641#1 ACAAGGATAACAACGGTCTGATACCGCGCGAGGTGTTCATCGATGGAATTATTGGCACAA 353 ************************************************************ consensus_1641#0 AGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCG 420 consensus_1641#1 AGTTCGACACGTCCAAGCTGGAGATGGGCGCCGTGGCCGATCTGTTCGATCGCAACGGCG 413 ************************************************************ consensus_1641#0 AAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCA 480 consensus_1641#1 AAGGACTGATCGATTGGCAGGAGTTCATTGCGGCGCTGCGACCGGACTGGCAGGACCGCA 473 ************************************************************ consensus_1641#0 AACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTA 540 consensus_1641#1 AACCGAAGACTGAGGCGGACAAGATCCACGACGAGGTCAAGCGGTTGGTCATGCTGTGTA 533 ************************************************************ consensus_1641#0 CGTGTCGGCAGAAGTTCCGCGTGTTCCAGG-TCGGCGAAGGCAAATATCGATTCGGTGAC 599 consensus_1641#1 CGTGTCGGCAGAAGTTCCGCGTGTTCCAGGGTCGGCGAAGGCAAATATCGATTCGGTGAC 593 ****************************** ***************************** consensus_1641#0 TCCCAGAAGCTTCGCT-- 615 consensus_1641#1 TCCCAGAAGCTTCGCTTG 611 **************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||