cluster # 1642

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Anopheles gambiae
cluster # 1642 cluster # 1642 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1642#0 length = 977 sequences # 1

consensus_1642#1 length = 296 sequences # 1

consensusID : consensus_1642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 977
fasta sequence

                              [CCGGATTAATCACGGGAAGCAGCGAGTTGGTCAGGTCTTAAATTTGAGTGTTTGATTTTTTTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGCTCTCTTTACTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGTGATCCAAATGGAGGAAATGGAAGTGCTTGGACTGGTTGGCATGTAATCCATGCCGTCACGTAAACTGCGCTACAATTACCCGGATTCACTCCAACTTTGACAACGGACANCGAATCCCGGGACAGAAATTTCCGACGGCCCGCAACACACGTTGTGGCCNAGTGGCCTTTCCGCAACGGGCANANGTTTCCCACACGTTGTTGCCAGGGAGAATTGGCGAANACTTGGATTCCACTTCGGAATTGACACATTTCAAAGNTGTNGGCCAGGATCANACNCCTGTCGGCAACANAAAACACCTTAAAAAACTTNCATTTTACACACACAACACACCCCCACCCTTAACAAACCCACCAAATAAAACATTAATCAAAGTCACCCACNTGATACAANACCACNATTANAACAACAAANTCATNNGGTCAATATAGGCACAACCATTTANNTGATAGGANCACCTCCCCCCCACCCAAACCCCTTAAACNGANACATNCGTGCGAACACCCCCCNNCAACCGCGGCTTAACTTATATTTTCCCCAACAACCCCCGTAGGCAANACATCCAATANNGGTAGCATACCAACCAACGANGGTAAACANAGGTNTTACTGNCCGTAGNAGCAGAGGGCTGAAANAACTAGTTANATACAACAGAACCCGCGCGGGNTNNATTACACTGNCGTAATGCAGTGGANTTACTNACAATTAAAAANGTANGTAAAAAACAAAATTAATATCACACATACCAACAAACAAAATANGGGTNAGTAATGAAAAAAACANAANNTAGGAGTNTAAATATGANCNAAA]

[+] EMBL AL693192             [CCGGATTAATCACGGGAAGCAGCGAGTTGGTCAGGTCTTAAATTTGAGTGTTTGATTTTTTTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGCTCTCTTTACTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGTGATCCAAATGGAGGAAATGGAAGTGCTTGGACTGGTTGGCATGTAATCCATGCCGTCACGTAAACTGCGCTACAATTACCCGGATTCACTCCAACTTTGACAACGGACANCGAATCCCGGGACAGAAATTTCCGACGGCCCGCAACACACGTTGTGGCCNAGTGGCCTTTCCGCAACGGGCANANGTTTCCCACACGTTGTTGCCAGGGAGAATTGGCGAANACTTGGATTCCACTTCGGAATTGACACATTTCAAAGNTGTNGGCCAGGATCANACNCCTGTCGGCAACANAAAACACCTTAAAAAACTTNCATTTTACACACACAACACACCCCCACCCTTAACAAACCCACCAAATAAAACATTAATCAAAGTCACCCACNTGATACAANACCACNATTANAACAACAAANTCATNNGGTCAATATAGGCACAACCATTTANNTGATAGGANCACCTCCCCCCCACCCAAACCCCTTAAACNGANACATNCGTGCGAACACCCCCCNNCAACCGCGGCTTAACTTATATTTTCCCCAACAACCCCCGTAGGCAANACATCCAATANNGGTAGCATACCAACCAACGANGGTAAACANAGGTNTTACTGNCCGTAGNAGCAGAGGGCTGAAANAACTAGTTANATACAACAGAACCCGCGCGGGNTNNATTACACTGNCGTAATGCAGTGGANTTACTNACAATTAAAAANGTANGTAAAAAACAAAATTAATATCACACATACCAACAAACAAAATANGGGTNAGTAATGAAAAAAACANAANNTAGGAGTNTAAATATGANCNAAA]




>consensus_1642#0
CCGGATTAATCACGGGAAGCAGCGAGTTGGTCAGGTCTTAAATTTGAGTGTTTGATTTTT
TTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGC
TCTCTTTACTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGTGATCCAAATGGAG
GAAATGGAAGTGCTTGGACTGGTTGGCATGTAATCCATGCCGTCACGTAAACTGCGCTAC
AATTACCCGGATTCACTCCAACTTTGACAACGGACANCGAATCCCGGGACAGAAATTTCC
GACGGCCCGCAACACACGTTGTGGCCNAGTGGCCTTTCCGCAACGGGCANANGTTTCCCA
CACGTTGTTGCCAGGGAGAATTGGCGAANACTTGGATTCCACTTCGGAATTGACACATTT
CAAAGNTGTNGGCCAGGATCANACNCCTGTCGGCAACANAAAACACCTTAAAAAACTTNC
ATTTTACACACACAACACACCCCCACCCTTAACAAACCCACCAAATAAAACATTAATCAA
AGTCACCCACNTGATACAANACCACNATTANAACAACAAANTCATNNGGTCAATATAGGC
ACAACCATTTANNTGATAGGANCACCTCCCCCCCACCCAAACCCCTTAAACNGANACATN
CGTGCGAACACCCCCCNNCAACCGCGGCTTAACTTATATTTTCCCCAACAACCCCCGTAG
GCAANACATCCAATANNGGTAGCATACCAACCAACGANGGTAAACANAGGTNTTACTGNC
CGTAGNAGCAGAGGGCTGAAANAACTAGTTANATACAACAGAACCCGCGCGGGNTNNATT
ACACTGNCGTAATGCAGTGGANTTACTNACAATTAAAAANGTANGTAAAAAACAAAATTA
ATATCACACATACCAACAAACAAAATANGGGTNAGTAATGAAAAAAACANAANNTAGGAG
TNTAAATATGANCNAAA

consensusID : consensus_1642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [CGAGTTGGTTAGGGCTTAAATTTGAGTGTTTGATTTTTTTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGCTCTCTTTAGCTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGGATCAAATGGAGGAAATGGAAGTGCTTGGACTGGTTGGATGTAATCATGCCGTCACGTAACTGCGCTACCACTTCCCGGATTCACTCCAACCTTTGACCAACGGCAGCGATCGGAGAATCGACGAAGTGGCAGTCTTCGAGGAAGTCAAGT]

[+] EMBL CNS08W9T             [CGAGTTGGTTAGGGCTTAAATTTGAGTGTTTGATTTTTTTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGCTCTCTTTAGCTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGGATCAAATGGAGGAAATGGAAGTGCTTGGACTGGTTGGATGTAATCATGCCGTCACGTAACTGCGCTACCACTTCCCGGATTCACTCCAACCTTTGACCAACGGCAGCGATCGGAGAATCGACGAAGTGGCAGTCTTCGAGGAAGTCAAGT]




>consensus_1642#1
CGAGTTGGTTAGGGCTTAAATTTGAGTGTTTGATTTTTTTGTAAAAATGCAAACAAAGTC
GTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGCTCTCTTTAGCTACTCCGTCAAG
TGCAGCACCCGCCTCAACCGATATGGATCAAATGGAGGAAATGGAAGTGCTTGGACTGGT
TGGATGTAATCATGCCGTCACGTAACTGCGCTACCACTTCCCGGATTCACTCCAACCTTT
GACCAACGGCAGCGATCGGAGAATCGACGAAGTGGCAGTCTTCGAGGAAGTCAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1642#0      CCGGATTAATCACGGGAAGCAGCGAGTTGGTCAGGTCTTAAATTTGAGTGTTTGATTTTT 60
consensus_1642#1      ----------------------CGAGTTGGTTAGGGCTTAAATTTGAGTGTTTGATTTTT 38
                                            ********* *** ************************

consensus_1642#0      TTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGC 120
consensus_1642#1      TTGTAAAAATGCAAACAAAGTCGTGTTTGATAATTGTGTTGATTGGTGCAGTATTTTTGC 98
                      ************************************************************

consensus_1642#0      TCTCTTTA-CTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATGTGATCCAAATGGA 179
consensus_1642#1      TCTCTTTAGCTACTCCGTCAAGTGCAGCACCCGCCTCAACCGATATG-GATC-AAATGGA 156
                      ******** ************************************** **** *******

consensus_1642#0      GGAAATGGAAGTGCTTGGACTGGTTGGCATGTAATCCATGCCGTCACGTAAACTGCGCTA 239
consensus_1642#1      GGAAATGGAAGTGCTTGGACTGGTTGG-ATGTAATC-ATGCCGTCACGTAA-CTGCGCTA 213
                      *************************** ******** ************** ********

consensus_1642#0      CAATTACCCGGATTCACTCCAAC-TTTGACAACGGACANCGAATCCCGGGACAGAAATTT 298
consensus_1642#1      CCACTTCCCGGATTCACTCCAACCTTTGACCAACGGCAGCGA---TCGGAG----AATCG 266
                      * * * ***************** ****** *  * ** ***    ***      ***  

consensus_1642#0      CCGACGGCCCGCAACACACGTTGTGGCCNAGTGGCCTTTCCGCAACGGGCANANGTTTCC 358
consensus_1642#1      ACGAAG--TGGCAGTCTTCGAGGAAGTCAAGT---------------------------- 296
                       *** *    ***     **  *  * * ***                            

consensus_1642#0      CACACGTTGTTGCCAGGGAGAATTGGCGAANACTTGGATTCCACTTCGGAATTGACACAT 418
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      TTCAAAGNTGTNGGCCAGGATCANACNCCTGTCGGCAACANAAAACACCTTAAAAAACTT 478
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      NCATTTTACACACACAACACACCCCCACCCTTAACAAACCCACCAAATAAAACATTAATC 538
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      AAAGTCACCCACNTGATACAANACCACNATTANAACAACAAANTCATNNGGTCAATATAG 598
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      GCACAACCATTTANNTGATAGGANCACCTCCCCCCCACCCAAACCCCTTAAACNGANACA 658
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      TNCGTGCGAACACCCCCCNNCAACCGCGGCTTAACTTATATTTTCCCCAACAACCCCCGT 718
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      AGGCAANACATCCAATANNGGTAGCATACCAACCAACGANGGTAAACANAGGTNTTACTG 778
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      NCCGTAGNAGCAGAGGGCTGAAANAACTAGTTANATACAACAGAACCCGCGCGGGNTNNA 838
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      TTACACTGNCGTAATGCAGTGGANTTACTNACAATTAAAAANGTANGTAAAAAACAAAAT 898
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      TAATATCACACATACCAACAAACAAAATANGGGTNAGTAATGAAAAAAACANAANNTAGG 958
consensus_1642#1      ------------------------------------------------------------
                                                                                  

consensus_1642#0      AGTNTAAATATGANCNAAA 977
consensus_1642#1      -------------------