These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGTAAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCTGTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAATGGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGTACGCCCGTTCGAATGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCACCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACAAAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAGCGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAATCGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAGACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACTATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTAAAATGAAGCACTCCGCCTCGGAACACTATAAT] [+] EMBL BM607258 [CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGTAAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCTGTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAATGGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGTACGCCCGTTCGAATGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCACCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACAAAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAGCGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAATCGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAGACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACTATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTAAAATGAAGCACTCCGCCTCGGAACACTATAAT] consensusID : consensus_1647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [CCGAACCCCTGTGTGAAACGCTGTACGTTTCTCGGTGAACGAAGTCCAATTTGCAGATGCAAAAATAATCAAATCGAATGTAATGACAAACGGTGGATCTCTTCGTGAGTGTGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGATGTAGGGGGCCTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCATCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACCAA] [+] EMBL BM645360 [CCGAACCCCTGTGTGAAACGCTGTACGTTTCTCGGTGAACGAAGTCCAATTTGCAGATGCAAAAATAATCAAATCGAATGTAATGACAAACGGTGGATCTCTTCGTGAGTGTGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGATGTAGGGGGCCTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCATCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1647#0 CCGGTTTGTATACAATGCACTTTGCCGAGTTTTGCACAAGCGCGAGATAAAAGTGAAAGT 60 consensus_1647#1 ----------------------------------------------------------CC 2 consensus_1647#0 AAAAATTTGTGGAGCAAAACAGAGCGCGCCCGCTCTGTGCGCTAGATTCATTACCATGCT 120 consensus_1647#1 GAACCCCTGTG---TGAAACGCTGTACGTTT-CTCGGTGAACGAAGTCCAATTTGCAGAT 58 ** **** **** * ** *** *** * * * ** * * * consensus_1647#0 GTGCTGGCCAACTGCTACCGCCCCGGATGTTGGCCGTCCGGTTCGGTGCTGCTCAACAAT 180 consensus_1647#1 G-------CAAAAATAATCAAATCGAATGTAA--TGACAAA--CGGTGGATCTCTTCGTG 107 * *** * * ** **** * * ***** *** * consensus_1647#0 GGTGACGGAAAAATAGTCAGATACAATCGGTGGTGGTGGCAGCTTTTGAAGCATCGTGGT 240 consensus_1647#1 AGTG-TGGCCAAACAGCACAACCGAACCAGTGTGGGTTGGA-----TGTAG----GGGGC 157 *** ** *** ** * ** * *** *** * * ** ** * ** consensus_1647#0 ACGCCCGTTCGAA---TGGAAGCGTGATTAAGAGATAAATCAACTCCTCAGAGGATATCA 297 consensus_1647#1 CTGTCCGCAGAAAATCTGGCGAATTGATTAAGAGATAAATCAACTCCTCAGAGGATATCA 217 * *** ** *** ************************************ consensus_1647#0 CCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAGGGGGAAATGAAACACA 357 consensus_1647#1 TCAAATGTTGCTCTTTTCTCCAAACTTTGGCTAAGCCATCCAAAGGGGAAATGAAACACC 277 ****************************************** *************** consensus_1647#0 AAAGTATTATCAGTGAAAAATGCCATTAAACTTGGTATTAGTTGAGATCATTGTGAAGAG 417 consensus_1647#1 AA---------------------------------------------------------- 279 ** consensus_1647#0 CGACTACGATAAGCTACTAAAGTGACGTAACCCCGTTGGATGAAATCGTCCCGCGCCAAT 477 consensus_1647#1 ------------------------------------------------------------ consensus_1647#0 CGATGAGCTCGATTGTCCTGCATTCGAAGCAGCTGAATCATACAACGCTTACGCTATGAG 537 consensus_1647#1 ------------------------------------------------------------ consensus_1647#0 ACGAAATGTGAAAGTGTTCGGACTCGTTTCCATCACCTGGATTGGTGGTGGTGATCTACT 597 consensus_1647#1 ------------------------------------------------------------ consensus_1647#0 ATTTCCAGGGCGACTACTATCACAATGACGGGAATCGTGCGCTGCGTTTGCGCAGCAGTA 657 consensus_1647#1 ------------------------------------------------------------ consensus_1647#0 AAATGAAGCACTCCGCCTCGGAACACTATAAT 689 consensus_1647#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||