These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence [CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAATGATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAAGTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCGAATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATTTAATTACTCGGGCCAGTTAGGCACGCAGGTACCGCGTTGTACCGTCCGTGGCATCGACAAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTACCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAACNGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTAAAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTATATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAGNCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAAACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCAAATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAAAAAAATACTTAATGCATCCACACAAA] [+] EMBL AL693236 [CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAATGATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAAGTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCGAATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATTTAATTACTCGGGCCAGTTAGGCACGCAGGTACCGCGTTGTACCGTCCGTGGCATCGACAAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTACCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAACNGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTAAAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTATATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAGNCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAAACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCAAATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAAAAAAATACTTAATGCATCCACACAAA] consensusID : consensus_1649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence [GCCTGCGGGCGGCAGTGTGTTTTGNTTACTTAAGGATGCGGCCGAACGAACGGACCTGAGGTGGAGAAGATTTACACGCACGCTGGTCCGAATTTTACCACCCCTCCCCACGCAGTATGGTGATCACACAACATCACCATATGTATTTAATTCTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGTCCGTCCGTGGCATCGACAAGTTTCAGCAATACTGAACCCTTATTTGAGACACAGGCACGGAAAAGGTTACATTAGGACAGGCCGAAGAACGGTCTAAACATCGATTGCATGCCAAACGGGTACAGCAGGGTGGTAGGTTATCGGTACGGGGTACACATAAGCAGCAGAACAGAAGCTACTTACAAGCGTATTGGATTTTATAGGCAAGACAATGTAAGTGCGNCCATTTTTCAGGCGATCGCNCCCTATCTTTAGAATGTTTAAAGGCCATATTTTNACNATTTTGCTTCCATTCCAACGTCGAACGTGCTTCTACGATCGTATAGCAATGCTACGAAGANCNAATCTGTATTGGACTATCTGGCNCTTTTCCCGTCAACAAAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG] [+] EMBL BX620315 [GCCTGCGGGCGGCAGTGTGTTTTGNTTACTTAAGGATGCGGCCGAACGAACGGACCTGAGGTGGAGAAGATTTACACGCACGCTGGTCCGAATTTTACCACCCCTCCCCACGCAGTATGGTGATCACACAACATCACCATATGTATTTAATTCTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGTCCGTCCGTGGCATCGACAAGTTTCAGCAATACTGAACCCTTATTTGAGACACAGGCACGGAAAAGGTTACATTAGGACAGGCCGAAGAACGGTCTAAACATCGATTGCATGCCAAACGGGTACAGCAGGGTGGTAGGTTATCGGTACGGGGTACACATAAGCAGCAGAACAGAAGCTACTTACAAGCGTATTGGATTTTATAGGCAAGACAATGTAAGTGCGNCCATTTTTCAGGCGATCGCNCCCTATCTTTAGAATGTTTAAAGGCCATATTTTNACNATTTTGCTTCCATTCCAACGTCGAACGTGCTTCTACGATCGTATAGCAATGCTACGAAGANCNAATCTGTATTGGACTATCTGGCNCTTTTCCCGTCAACAAAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1649#0 CCAGAATTCCCGCGGTTAATAATGATGATTCGTACGANCGCGCGCTCACACACNGCTAAT 60 consensus_1649#1 ------------------------------------------------------------ consensus_1649#0 GATCGCTCATCATCCCGCTTTTCATTGCCTGCGGGCGGCAGTGTGTTTTTGTTTACTTAA 120 consensus_1649#1 --------------------------GCCTGCGGGCGGCAGTGTGTTTT-GNTTACTTAA 33 *********************** * ******** consensus_1649#0 GTGATGCGGCCGAACGAACGGACCTGAGTGTGGAGAAGATTTACACGCACGCTGTGTCCG 180 consensus_1649#1 G-GATGCGGCCGAACGAACGGACCTGAG-GTGGAGAAGATTTACACGCACGCTG-GTCCG 90 * ************************** ************************* ***** consensus_1649#0 AATTTTACCACACCTACCCCACGACAGTATGTGTGATCACACAACATCACCATATGTATT 240 consensus_1649#1 AATTTTACCACCCCT-CCCCACG-CAGTATG-GTGATCACACAACATCACCATATGTATT 147 *********** *** ******* ******* **************************** consensus_1649#0 TAATTACTCGGGCCAG-TTAGGCACGCAGGTACCGC-GTTGTACCGTCCGTGGCATCGAC 298 consensus_1649#1 TAATT-CTCGGGCCAGGTTAGGCACGCAGGTACCGCCGTTGT-CCGTCCGTGGCATCGAC 205 ***** ********** ******************* ***** ***************** consensus_1649#0 AAGTTTCAGCNAATAACTTGAACCCGATTTNTGAGGAACACAGGCACGGAACACAGGTTA 358 consensus_1649#1 AAGTTTCAGCAA-TA--CTGAACCC---TTATTTGAGACACAGGCACGGAAAA--GGTTA 257 ********** * ** ******* ** * * ************** * ***** consensus_1649#0 CCATTAGGCACAGAGCCTGCAAGCAACTGGTCTANACCATCGCATTGCCATTGCCCAAAC 418 consensus_1649#1 C-ATTAGG-ACAG-----GCCGAAGAACGGTCTAAAC-ATCG-ATTGC--ATGCC-AAAC 305 * ****** **** ** * ****** ** **** ***** **** **** consensus_1649#0 NGGGTCACAAGACCAGGGATGCGCTAGGTTCATCAGTCACCGAGGCGAGTTNCACCATTA 478 consensus_1649#1 GGG----------------TACAGCAGGGTGGTAGGTTATCGGTACGGGGTACAC--ATA 347 ** * * *** * * ** * ** ** * * *** ** consensus_1649#0 AAGGCCAGAACAAGGCAACAGCANAGCTAACTATAACAAAAGACGTCATATGGAATTTAT 538 consensus_1649#1 AGCAGCAGAACAG----------AAGCTACTTACAAG---------CGTATTGGATTT-T 387 * ******* ***** ** ** * *** * **** * consensus_1649#0 ATATCAGGGCCAACAGAGACACAAATGTCACAAGTTGCGATCCCATATAAANATCCAGAG 598 consensus_1649#1 ATA----GGC-----AAGACA---ATGT----AAGTGCGNCC---------ATTTTTCAG 422 *** *** ***** **** * **** * * ** consensus_1649#0 NCGCATCGCGCAATATCATTCAGCAATGTATTAAACAGGGCCATANTANTATTAACACAA 658 consensus_1649#1 GCG-ATCGCNCCCTATC-TTTAG-AATGT-TTAAA---GGCCATATTTT------NACNA 469 ** ***** * **** ** ** ***** ***** ******* * ** * consensus_1649#0 ACTTATAGCTATACCATNTCCAACGGTCGAACAGATGCATTCTACGCAGTCGTACTAGCA 718 consensus_1649#1 TTTTGCTTCCAT------TCCAACG-TCGAACG--TGC-TTCTACG--ATCGTA-TAGCA 516 ** * ** ******* ****** *** ******* ***** ***** consensus_1649#0 AATGCTAGGAAANAACGAATCTGTATTGGACTATCTGGACGCATTATATTCCCGTCAAAA 778 consensus_1649#1 A-TGCTACGAA-GANCNAATCTGTATTGGACTATCTGG-----CNCTTTTCCCGTCAACA 569 * ***** *** * * ********************* * ********** * consensus_1649#0 AAAAATACTTAATGCATCCACACAAA------------------- 804 consensus_1649#1 AAATACTTTTGCTCCACCAAAACCCAGCCGTGTGACACCATTANG 614 *** * ** * ** * * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||