cluster # 1658

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Anopheles gambiae
cluster # 1658 cluster # 1658 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1658#0 length = 565 sequences # 1

consensus_1658#1 length = 537 sequences # 1

consensusID : consensus_1658#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [CCGCCGGGCTGTGGTTGGGGGAGGTGTGAGGTGGTAGGCCCCTGTGGTTAGGCAGATTAGGCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACCCAGTGCATTATTAAGCAGATATAGCTTCAAAACCACCGCAAAAACCCTTTCCCACAACACCCAGCACAGACACTATCTGCCAAAAAGGGAATGAAAGCTCTCTCTCTCTGCGGGGAGTCAAGCTGCGTGCGTCAATTTTGCTCCAGAATGTTTTGCGATTAGTATGTGAAGGATGGGATTGATCGTTTCCTTTTCCCGGTGAAAAGGTTTAATGCTCGCGTTCAACGCAAACAGGGTTCGTCCAGTTTCATTTATTGGTTCTCCAACACGCTCCAACACGGCAAGGGGGCTTGATGCATTCGTTCAGTGCAGTTAATCGCATTGCAGCATAAATTCAGTTTGCACTGCCATTATCGCAATGCTGATTGAATTGTGCACTCGTGTCACGTACTGAGCCCGTCCGTAATCGGATGGCGTTAATTAGATCAGCCGGGCCTCAACCGTGCCTCGTTGGGC]

[+] EMBL BM612394             [CCGCCGGGCTGTGGTTGGGGGAGGTGTGAGGTGGTAGGCCCCTGTGGTTAGGCAGATTAGGCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACCCAGTGCATTATTAAGCAGATATAGCTTCAAAACCACCGCAAAAACCCTTTCCCACAACACCCAGCACAGACACTATCTGCCAAAAAGGGAATGAAAGCTCTCTCTCTCTGCGGGGAGTCAAGCTGCGTGCGTCAATTTTGCTCCAGAATGTTTTGCGATTAGTATGTGAAGGATGGGATTGATCGTTTCCTTTTCCCGGTGAAAAGGTTTAATGCTCGCGTTCAACGCAAACAGGGTTCGTCCAGTTTCATTTATTGGTTCTCCAACACGCTCCAACACGGCAAGGGGGCTTGATGCATTCGTTCAGTGCAGTTAATCGCATTGCAGCATAAATTCAGTTTGCACTGCCATTATCGCAATGCTGATTGAATTGTGCACTCGTGTCACGTACTGAGCCCGTCCGTAATCGGATGGCGTTAATTAGATCAGCCGGGCCTCAACCGTGCCTCGTTGGGC]




>consensus_1658#0
CCGCCGGGCTGTGGTTGGGGGAGGTGTGAGGTGGTAGGCCCCTGTGGTTAGGCAGATTAG
GCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACCCAGTGCATTAT
TAAGCAGATATAGCTTCAAAACCACCGCAAAAACCCTTTCCCACAACACCCAGCACAGAC
ACTATCTGCCAAAAAGGGAATGAAAGCTCTCTCTCTCTGCGGGGAGTCAAGCTGCGTGCG
TCAATTTTGCTCCAGAATGTTTTGCGATTAGTATGTGAAGGATGGGATTGATCGTTTCCT
TTTCCCGGTGAAAAGGTTTAATGCTCGCGTTCAACGCAAACAGGGTTCGTCCAGTTTCAT
TTATTGGTTCTCCAACACGCTCCAACACGGCAAGGGGGCTTGATGCATTCGTTCAGTGCA
GTTAATCGCATTGCAGCATAAATTCAGTTTGCACTGCCATTATCGCAATGCTGATTGAAT
TGTGCACTCGTGTCACGTACTGAGCCCGTCCGTAATCGGATGGCGTTAATTAGATCAGCC
GGGCCTCAACCGTGCCTCGTTGGGC

consensusID : consensus_1658#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CCCAGGCTTAGCTTGGGACGCTGGTGCCGCCGCGACATTATCATACAGAAAAGCGTTCACCCACCGATAACGCCGCCCAAGAATGGGAAAATCCCCTACAACAGTTTGTCGTTTAAGGAGCTGATGCAGCTTAACGAAACGCCCAAGATGCACGGACCGGAAGCGAAGGCGGCGAAGGTAGCAAAGGCGGGTGGTGGCTCGCTCGCCGGGCCGGAGAATGGACCGAGCGGCAGAAACTATGAACACTTCCTGGACGATTCGGGGCTCTGCTCGAAGCCGATCATACTGCCGCGCAAGAAGCGCGTCTACTACTCCGGACCGTTCGTGTGACCGGGCTGTGGTTGGAGTGTTGTTTATTTGTTGTTCGATTTGTACGGATAGTAGAGCTCGGGTCGGTCGTTTTTTGGATGGGGGATGGGGAGTGGTAGGCCCCTGTGGTAGGCAGATTAGGCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACCCAGTGCATTATTAAGCAGATACAGCTTCAGAAACAACG]

[+] EMBL AL693297             [CCCAGGCTTAGCTTGGGACGCTGGTGCCGCCGCGACATTATCATACAGAAAAGCGTTCACCCACCGATAACGCCGCCCAAGAATGGGAAAATCCCCTACAACAGTTTGTCGTTTAAGGAGCTGATGCAGCTTAACGAAACGCCCAAGATGCACGGACCGGAAGCGAAGGCGGCGAAGGTAGCAAAGGCGGGTGGTGGCTCGCTCGCCGGGCCGGAGAATGGACCGAGCGGCAGAAACTATGAACACTTCCTGGACGATTCGGGGCTCTGCTCGAAGCCGATCATACTGCCGCGCAAGAAGCGCGTCTACTACTCCGGACCGTTCGTGTGACCGGGCTGTGGTTGGAGTGTTGTTTATTTGTTGTTCGATTTGTACGGATAGTAGAGCTCGGGTCGGTCGTTTTTTGGATGGGGGATGGGGAGTGGTAGGCCCCTGTGGTAGGCAGATTAGGCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACCCAGTGCATTATTAAGCAGATACAGCTTCAGAAACAACG]




>consensus_1658#1
CCCAGGCTTAGCTTGGGACGCTGGTGCCGCCGCGACATTATCATACAGAAAAGCGTTCAC
CCACCGATAACGCCGCCCAAGAATGGGAAAATCCCCTACAACAGTTTGTCGTTTAAGGAG
CTGATGCAGCTTAACGAAACGCCCAAGATGCACGGACCGGAAGCGAAGGCGGCGAAGGTA
GCAAAGGCGGGTGGTGGCTCGCTCGCCGGGCCGGAGAATGGACCGAGCGGCAGAAACTAT
GAACACTTCCTGGACGATTCGGGGCTCTGCTCGAAGCCGATCATACTGCCGCGCAAGAAG
CGCGTCTACTACTCCGGACCGTTCGTGTGACCGGGCTGTGGTTGGAGTGTTGTTTATTTG
TTGTTCGATTTGTACGGATAGTAGAGCTCGGGTCGGTCGTTTTTTGGATGGGGGATGGGG
AGTGGTAGGCCCCTGTGGTAGGCAGATTAGGCAGATGATTTACTTAATATCCGTATCGGT
ATACGGTAAGGCGATTACCCAGTGCATTATTAAGCAGATACAGCTTCAGAAACAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1658#0      CCGCCGGGCTGTGGTTGGGGGAGGTGTGAGGTGGTAGGCCCCTGTGGTTAGGCAGATTAG 60
consensus_1658#1      --CCCAGGCTTAGCTTGGGACGCTGGTGCCGCCGCGA-----CATTATCATACAGAAAAG 53
                         ** ****  * *****      ***  *  *          *  * *  ****  **

consensus_1658#0      GCAGATGATTTACTTAATATCCGTATCGGTATACGGTAAGGCGATTACC-CAGTGCATTA 119
consensus_1658#1      C--GTTCACCCACCGATAACGCCGCCCAAGAATGGGAAAATCCCCTACAACAGTTTGTCG 111
                         * * *   **  *  *  *    *   *   ** **  *   ***  ****   *  

consensus_1658#0      TT----AAGCAGATATAGCTTCAAAACCACCGCAAAAACCCTTTCCCACAACACCCAGCA 175
consensus_1658#1      TTTAAGGAGCTGATGCAGCTTAACGAAACGCCCAAGATGCACGGACCGGAAGCGAAGGCG 171
                      **     *** ***  ***** *  *    * *** *  *     **  **      ** 

consensus_1658#0      CAGACACTATCTGCCAAAAAGGGAATGAAAGCTCTCTCTCTCTGCGGGGAGTCAAGCTGC 235
consensus_1658#1      GCGAAGGTAGC-----AAAGGCGGGTGGTGGCTCGCTCGCCGGGCCGGAGAATGGACCGA 226
                        **   ** *     *** * *  **   **** *** *   ** **        * * 

consensus_1658#0      GTG-CGTCAATTTTGCTCCAGAATGTTTTGCGATTAGTATGTGAAGGATGGGATTGATCG 294
consensus_1658#1      GCGGCAGAAACTATGAAC--ACTTCCTGGACGATTCGGG-GCTCTGCTCGAAGCCGATCA 283
                      * * *   ** * **  *     *  *   ***** *   *    *   *     **** 

consensus_1658#0      TTTCCTTTTCCCGGTGAAAAGGTTTAATGCTCGCGTTCA---ACGCAAACAGGGTTCGTC 351
consensus_1658#1      TA-CTGCCGCGCAAGAAGCGCGTCTACTACTCCGGACCGTTCGTGTGACCGGGCTGTGGT 342
                      *  *     * *    *    ** ** * ***  *  *      *  * * ** *  *  

consensus_1658#0      C--AGTTTCATTTATTGGTTCTCCAACACGCTCCAACACGGCAAGGGGGCTTGATGCATT 409
consensus_1658#1      TGGAGTGTTGTTTATTTGTTGTTCGATTTGTACGGATA-----GTAGAGCTCGGGTCGGT 397
                         *** *  ****** *** * * *   *  *  * *        * *** *   *  *

consensus_1658#0      CGTTCAGTGCAGTTAATCGCATTGCAGCATAAATTCAGTTTGCACTGCCATTATCGCAAT 469
consensus_1658#1      CGTTTTTTGGA--TGGGGGATGGGGAGTGGTAGGCCCCTGTGGTAGGCAGATTAGGCA-- 453
                      ****   ** *  *    *    * **    *   *  * **    **   *   ***  

consensus_1658#0      GCTGATTGAATTGTGCACTCGTGTCACGTACTGAGCCCGTCCGTAATCGGATGGCGTTAA 529
consensus_1658#1      GATGATTTACTTA-ATATCCGTATCG-GTATACGGTAAGGCGATTACCCAGTG-CATTA- 509
                      * ***** * **    *  *** **  ***    *   * *  * * *   ** * *** 

consensus_1658#0      TTAGATCAGCCGGGCCTCAACCGTGCCTCGTTGGGC 565
consensus_1658#1      TTAAGCAGATACAGCTTCAGAAACAACG-------- 537
                      ***          ** ***       *