These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1661#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTGGGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGATGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGNTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACC] [+] EMBL BX623932 [GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTGGGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGATGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGNTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACC] consensusID : consensus_1661#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [ATCGCCACGAGGCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGTTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTTACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGCATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA] [+] EMBL AL933800 [ATCGCCACGAGGCGCACTGATGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAGAGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGGACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGGTTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAGCACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACAAAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTTACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGCATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1661#0 GTATTTTTCGCATTCGCAACGTTATGATTATAACCATTATCACCATGCGATTCGGCAGTG 60 consensus_1661#1 ------------------------------------------------------------ consensus_1661#0 GGCTTCCCGAATGGAGCGCGATTCGGACCCGGGATACAGGGCAGAAACGTTAATGAAAGA 120 consensus_1661#1 ------------------------------------------------------------ consensus_1661#0 TGGAGTCTTCTTGGGGGAGGGGGAGGTATCCGGGGAACAGCTTCTGGTTTTCCGCACTGA 180 consensus_1661#1 ------------------------------------ATCGCCACGAGG----CGCACTGA 20 * ** * * ******** consensus_1661#0 TGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAG 240 consensus_1661#1 TGCGCTCGGGATGGCCGACTGCCCGGAAGCAATCTGGCACACGAAATAGGAACCCAGGAG 80 ************************************************************ consensus_1661#0 AGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGG 300 consensus_1661#1 AGTGTGGGCTGGCAGGGTAGTTAATTTTCATTTTCATTCTAAAAATGCCTTCGCTGATGG 140 ************************************************************ consensus_1661#0 ACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGG 360 consensus_1661#1 ACTCATCGTTGCAGAGCGAATCAAAAGTTTCTTAATTAATGGAGCCCGAAAATCCGACGG 200 ************************************************************ consensus_1661#0 NTTCAAGGACTCAAGGTTGAAATACAAATTCCTCTTTTAGCAGAATCATATANATCACAG 420 consensus_1661#1 TTTCAAGGACTCAAGGTTGAAATACAAATTCTTCTTTTAGCAGAATCATATAAATCACAG 260 ****************************** ******************** ******* consensus_1661#0 CACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACA 480 consensus_1661#1 CACAAAGAAGATGAAAAACGAAAACAAGATCCCTAATTTGAAGAGGCGCAATGGTGTACA 320 ************************************************************ consensus_1661#0 AAGCAAATTGGCTCTAGTTTTATAGTACTTTACC-------------------------- 514 consensus_1661#1 AAGCAAATTGGCTCTAGTTTTATAGTACTTTACCTAAAAGTGTTGATACTTTAATTCCTT 380 ********************************** consensus_1661#0 ------------------------------------------------------------ consensus_1661#1 ACTTAACTTCAAGACCCTACGCGATAGTGTCAGTAGCAGTAGAAAGCTCAATTTGAGTGC 440 consensus_1661#0 ----------------------------------------------------------- consensus_1661#1 ATTAAGCATAGTAGAAAAAGCAAACGTAATGGAGAGCACTTAAAAAAGTGTACATAAAA 499 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||