These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1667#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence [CCCGAGGTTTATTCTATAGCAGTTGCCTACTGGGNCTGACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCGTCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCACGGTCGCATCAACAACGGTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCGCGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCGGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCACCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGCCAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCCCATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG] [+] EMBL AL693407 [CCCGAGGTTTATTCTATAGCAGTTGCCTACTGGGNCTGACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCGTCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCACGGTCGCATCAACAACGGTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCGCGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCGGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCACCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGCCAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCCCATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG] consensusID : consensus_1667#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCGTCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACGGTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCGCGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCACCATCAGTGGCTGGGGTGAGACGGCT] [+] EMBL BM578923 [CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCAGCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGGCTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCGTCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACGGTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGCAGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGACGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCGCGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCCAGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTCAACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCACCATCAGTGGCTGGGGTGAGACGGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1667#0 ---------CCCGAGGTTTATTC-TAT-AGCAGTTGCC-TACTGGGNCTGACGATCGTCA 48 consensus_1667#1 CCGCGGACGCGTGGGTGCGATTCCTATCAGCAGTTGCCCTACTGGGGCTAACGATCGTCA 60 * * * **** *** ********** ******* ** ********** consensus_1667#0 GCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGG 108 consensus_1667#1 GCGTCGTTGCCTGCGTCTCCGGCGAGGGAACGATTACACGTCTGGAAGATATCAACTGGG 120 ************************************************************ consensus_1667#0 CTGAGGTACGTCCGGTACAGGAGAGCCCCTTGTTCAAGGCTAAGCGGGCGGCCAGCTTCG 168 consensus_1667#1 CTGAGGTGCGTCCGGTACAGGAAAGTCCCTTGTTCAAGGCTAAGCGAGCAGCCAGCTTCG 180 ******* ************** ** ******************** ** ********** consensus_1667#0 TCGAACGTTATTTGGAACGGGTGGCCCCTGCTCCGGAGCGCAC-GGTCGCATCAACAACG 227 consensus_1667#1 TCGAACGGTATTTGGAACGGGCGGCCCCTGCTCCGGAGCGCACTGGTCGCATCAACAACG 240 ******* ************* ********************* **************** consensus_1667#0 GTGTCATCGTCGGTCCGACCGATGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGC 287 consensus_1667#1 GTGTCGTCGTCGGTCCGACCGACGTGCCGTACATTGTCGGTGTGCTGGTGTCGGTCGAGC 300 ***** **************** ************************************* consensus_1667#0 AGGGAACATACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGA 347 consensus_1667#1 AGGGCACGTACTTCTGCGGAGGTGTGCTGGTGTCCCGCACGCACGTCCTCACCTCGGCGA 360 **** ** **************************************************** consensus_1667#0 CGTGTGTCGAAGGCCAGACGTC-ATTACGGTTCTGCTGGGTGCGAGCGACATTACGCGCG 406 consensus_1667#1 CGTGTGTCGAAGGCCAGACGTCCATTACGGTGCTGCTGGGTGCGAGTGATATTACGCGCG 420 ********************** ******** ************** ** ********** consensus_1667#0 CGCAGGACTTTGTCGTCGTGAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCC 466 consensus_1667#1 CGCAGGACTTTGTCGTCGTAAGCCATGTGCGAGTGCATCCGGACTTCAGTTCCTTCTTCC 480 ******************* **************************************** consensus_1667#0 AGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTC 526 consensus_1667#1 AGGCGAACGATCTCGCCATTCTGACCCTTTCCCGCATGCCACGGTTTAACGATCAAATTC 540 ************************************************************ consensus_1667#0 AACTGGCACGTCTTCCCCGC-GGTCACAGGTGGGTGAATCGTNCACGAACGCTTGGACCA 585 consensus_1667#1 AACTGGCACGTCTTCCCCGCCGGTCACAGGTGGGTGAATCGTTCACGAACGCTTGGACCA 600 ******************** ********************* ***************** consensus_1667#0 CCATCCAGTGGCTGGGGTTGAGACGGCTTCCAACACTGGGCGAGGCACTACCAATGCAGC 645 consensus_1667#1 CCATC-AGTGGCTGGGGT-GAGACGGCT-------------------------------- 626 ***** ************ ********* consensus_1667#0 CAGCTTCGTTCGGATGCGCTCACAGNGTGATCTCCAACTTTAGCTGCACGATCAGCTTCC 705 consensus_1667#1 ------------------------------------------------------------ consensus_1667#0 CATTATATACTGAGATCTTCCAATGTTGGACTCATCGGATGGTGGAGCTCCTGTNTG 762 consensus_1667#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||