These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCAAGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCACAGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAAAGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGAGAGTGATGGGGGGAGGGGGTTATAAGGATGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAAATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGT] [+] EMBL BX614955 [GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCAAGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCACAGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAAAGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGAGCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGAGAGTGATGGGGGGAGGGGGTTATAAGGATGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAAATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGT] consensusID : consensus_1678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [CGCGTCCGGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGAGAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAAATTGAATGAAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCGCCGGGGCGATAGTCAGAGTAAAGAAGAGAGC] [+] EMBL BM634481 [CGCGTCCGGCTTTTTCTGCTGATAAAGAGAGGGAGGAGAGAGAGAGATAGAGAAAGAGAAAGTGAGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGAGAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGTCAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTATAGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAAATTGAATGAAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAATGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCGCCGGGGCGATAGTCAGAGTAAAGAAGAGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1678#0 GCGTGAATCAGTTTTGTAAAAACTTGTATGTTTGTTATAGCTTATAGTAAATACGAACCA 60 consensus_1678#1 ------------------------------------------------------------ consensus_1678#0 AGGAAGAAAAGTAGGCGATGAGCAGATGATGCAAGAGCTGCTAGAGCTGGAACAGGCCAC 120 consensus_1678#1 ------------------------------------------------------------ consensus_1678#0 AGTGTTGACAGATGTCATAACAAACTGCAAGAAAAAAATACAACTGAACGATAGAGAGAA 180 consensus_1678#1 ---------------------------------------------------CGCGTCCGG 9 consensus_1678#0 AGATAAAGAATAAAAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAG 240 consensus_1678#1 CTTTTTCTGCTGATAAAGAGAGGGAG-----GAGAGAGAGAGATAGAGAAAGAGAAAGTG 64 * * * * ****** *** ********** * ***** ******** * consensus_1678#0 AGAGAGAAAGAGAAAGAGAGAG-AGAGAGAGAGAGAAAGAGAGAAAGAGAGAGAGAGAGA 299 consensus_1678#1 AGAGAGAGAGAGAAAGAGAGGGGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 124 ******* ************ * ******* ***** ******* *************** consensus_1678#0 GCGAGAACGGGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGAGTCGGAAGA 359 consensus_1678#1 ACAAGAACGAGAACGGGAACGACCAGAAAAAGAGATTGAGTGAGTGTGTGCGTCGGAAGA 184 * ****** **************************************** ********* consensus_1678#0 GA------GTGATGGGGGGAGGGG-GTTATAAGGATGAGAAAGAAAGAAAATAGATCAGT 412 consensus_1678#1 GAAAGAGAGTGATGGGGGGATGGGCGTTATAAGGGTGAGAAAGAAAGAAAATAGATCAGT 244 ** ************ *** ********* ************************* consensus_1678#0 CAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTAT 472 consensus_1678#1 CAAATTGCAGTGGAGTTGAGCAATTTGGATGGTGTACTGTCCTGGCAATTATTCAAGTAT 304 ************************************************************ consensus_1678#0 AGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAACGAAGAA 532 consensus_1678#1 AGAAATAGTGCATTTCCATTACATTCTGTCGTCTCTTACGTCCACACCACGAATGAAGAA 364 ***************************************************** ****** consensus_1678#0 ATCGAATGAAAGAAGAAGAACTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAA 592 consensus_1678#1 ATTGAATGAAAGAAGAA---CTGTGTAACTGTGAGTGGAATGCTGGAAGAGAGAAGCAAA 421 ** ************** **************************************** consensus_1678#0 TGGCCGATGT-------------------------------------------------- 602 consensus_1678#1 TGGCCGATGTTTGTTAAAACAAAAAAAATGCAAAATAAAAACAGAAGACAGAAAATACCG 481 ********** consensus_1678#0 ------------------------------- consensus_1678#1 CCGGGGCGATAGTCAGAGTAAAGAAGAGAGC 512 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||