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Anopheles gambiae
cluster # 1694 cluster # 1694       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1694#0 length = 829 sequences # 1  
consensus_1694#1 length = 406 sequences # 1  

consensusID : consensus_1694#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 829
fasta sequence
                              [AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCGGCTCCACACGTGCACTGACCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGTGCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTCGACAGCTGCGCGGGTCGGCCAAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCAGCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGCTGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCTGCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGCTTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCAGAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGTCGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGTGCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCGTCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC]

[+] EMBL AL693557             [AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCGGCTCCACACGTGCACTGACCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGTGCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTCGACAGCTGCGCGGGTCGGCCAAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCAGCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGCTGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCTGCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGCTTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCAGAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGTCGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGTGCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCGTCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC]


>consensus_1694#0 AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCG GCTCCACACGTGCACTGACCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTGCC GATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCGCCGGCCCCGCCGCCGA CGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGTGCG GGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTCGACAGCTGCGCGGG TCGGCCAAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCAGCAGA AACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGCTGGCT GACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCTGCCTG GCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGCTTCGC GCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCAGAGCT TGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGTCGTCC GAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGTGCACG CGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCGTCGCA GCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC



consensusID : consensus_1694#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence
                              [CCGGCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTGCAGACCACGGTTGGCGCCGGCTGCTCCCANCCCCTCGGGTGCGGGCAGCGCCTGCCCGTGCGCCTGCTGTGGCGGTGGNGCGCGTCCGACAGCGCGCGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACGGNCAGCATAAACGCGCCGATGGNCATCGCNATCCACACCCACTGCCGCTGCANAGCGGCCGACAGCGGCAGCCACNGCCNCTGCGTGGCACTGGCGCTTCANCCACCCGCCGGCG]

[+] EMBL BX627654             [CCGGCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTGCAGACCACGGTTGGCGCCGGCTGCTCCCANCCCCTCGGGTGCGGGCAGCGCCTGCCCGTGCGCCTGCTGTGGCGGTGGNGCGCGTCCGACAGCGCGCGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACGGNCAGCATAAACGCGCCGATGGNCATCGCNATCCACACCCACTGCCGCTGCANAGCGGCCGACAGCGGCAGCCACNGCCNCTGCGTGGCACTGGCGCTTCANCCACCCGCCGGCG]


>consensus_1694#1 CCGGCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCG CTGCCGATCGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCC GCCGACGCCGCTGTGGACTGCAGACCACGGTTGGCGCCGGCTGCTCCCANCCCCTCGGGT GCGGGCAGCGCCTGCCCGTGCGCCTGCTGTGGCGGTGGNGCGCGTCCGACAGCGCGCGGG TCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACGGNCAGCATA AACGCGCCGATGGNCATCGCNATCCACACCCACTGCCGCTGCANAGCGGCCGACAGCGGC AGCCACNGCCNCTGCGTGGCACTGGCGCTTCANCCACCCGCCGGCG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1694#0      AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCG 60
consensus_1694#1      ---------------------------------------------------------CCG 3
                                                                               ***

consensus_1694#0      GCTCC-ACACGTGCACTGA-CCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTG 118
consensus_1694#1      GCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTG 63
                      ***** ************  ******* ********************************

consensus_1694#0      CCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTC-GCCGGCCCCGCCGC 177
consensus_1694#1      CCGATC-GTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGC 122
                      ****** ************************************** **************

consensus_1694#0      CGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGT 237
consensus_1694#1      CGACGCCGCTGTGGACT-GCAGACCACGGTTGGCGCC-GGCTGCTCCCANCCCCTCGGGT 180
                      ***************** ******************* *********** **********

consensus_1694#0      GCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTC-GACAGCTGCG 296
consensus_1694#1      GCGGGCAG--CGCCTGCCCGTGCGCCTGCTGTGGC-GGTGGNGCGCGTCCGACAGC-GCG 236
                      *******    ************************ ***** ******* ****** ***

consensus_1694#0      CGGGTCGGCC-AAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCA 355
consensus_1694#1      CGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACG-GNCA 295
                      ********** **  ***************************** ********** * **

consensus_1694#0      GCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGC 415
consensus_1694#1      GCATAAAC----GCGCCGATGGNCATC--GCNATCCACACCCACTGCC-GCTGCA--NAG 346
                      *** ****    **     * * ****     **************** ******     

consensus_1694#0      TGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCT 475
consensus_1694#1      CGGCCGACA--GCGGCA-GCCACNG--CCNCTGCGTGGCACTGGC-GCTTCANCCACCC- 399
                       *** ****    **** *****    *  *********  **** ****** ****** 

consensus_1694#0      GCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGC 535
consensus_1694#1      -GCCGGCG---------------------------------------------------- 406
                        * ***                                                     

consensus_1694#0      TTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCA 595
consensus_1694#1      ------------------------------------------------------------
                                                                                  

consensus_1694#0      GAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGT 655
consensus_1694#1      ------------------------------------------------------------
                                                                                  

consensus_1694#0      CGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGT 715
consensus_1694#1      ------------------------------------------------------------
                                                                                  

consensus_1694#0      GCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCG 775
consensus_1694#1      ------------------------------------------------------------
                                                                                  

consensus_1694#0      TCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC 829
consensus_1694#1      ------------------------------------------------------
                                                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)