These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 829 fasta sequence [AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCGGCTCCACACGTGCACTGACCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGTGCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTCGACAGCTGCGCGGGTCGGCCAAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCAGCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGCTGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCTGCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGCTTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCAGAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGTCGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGTGCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCGTCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC] [+] EMBL AL693557 [AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCGGCTCCACACGTGCACTGACCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGTGCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTCGACAGCTGCGCGGGTCGGCCAAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCAGCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGCTGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCTGCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGCTTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCAGAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGTCGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGTGCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCGTCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC] consensusID : consensus_1694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence [CCGGCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTGCAGACCACGGTTGGCGCCGGCTGCTCCCANCCCCTCGGGTGCGGGCAGCGCCTGCCCGTGCGCCTGCTGTGGCGGTGGNGCGCGTCCGACAGCGCGCGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACGGNCAGCATAAACGCGCCGATGGNCATCGCNATCCACACCCACTGCCGCTGCANAGCGGCCGACAGCGGCAGCCACNGCCNCTGCGTGGCACTGGCGCTTCANCCACCCGCCGGCG] [+] EMBL BX627654 [CCGGCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTGCCGATCGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGCCGACGCCGCTGTGGACTGCAGACCACGGTTGGCGCCGGCTGCTCCCANCCCCTCGGGTGCGGGCAGCGCCTGCCCGTGCGCCTGCTGTGGCGGTGGNGCGCGTCCGACAGCGCGCGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACGGNCAGCATAAACGCGCCGATGGNCATCGCNATCCACACCCACTGCCGCTGCANAGCGGCCGACAGCGGCAGCCACNGCCNCTGCGTGGCACTGGCGCTTCANCCACCCGCCGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1694#0 AATTGCCGAGGCTTTCTGCGCGGCACTGAGTGCAAAGTGTAGATATAATGCGCCGCCCCG 60 consensus_1694#1 ---------------------------------------------------------CCG 3 *** consensus_1694#0 GCTCC-ACACGTGCACTGA-CCCGACCAAATTCGTCAGCCGCTCAAAATACGATTCGCTG 118 consensus_1694#1 GCTCCCACACGTGCACTGNACCCGACCNAATTCGTCAGCCGCTCAAAATACGATTCGCTG 63 ***** ************ ******* ******************************** consensus_1694#0 CCGATCTGTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTC-GCCGGCCCCGCCGC 177 consensus_1694#1 CCGATC-GTAACCAAAACGAAGTCGTAATGCGCCGCCGCCGGGTCCGCCGGCCCCGCCGC 122 ****** ************************************** ************** consensus_1694#0 CGACGCCGCTGTGGACTTGCAGACCACGGTTGGCGCCTGGCTGCTCCCAACCCCTCGGGT 237 consensus_1694#1 CGACGCCGCTGTGGACT-GCAGACCACGGTTGGCGCC-GGCTGCTCCCANCCCCTCGGGT 180 ***************** ******************* *********** ********** consensus_1694#0 GCGGGCATGCTGCCTGCCCGTGCGCCTGCTGTGGCTGGTGGTGCGCGTC-GACAGCTGCG 296 consensus_1694#1 GCGGGCAG--CGCCTGCCCGTGCGCCTGCTGTGGC-GGTGGNGCGCGTCCGACAGC-GCG 236 ******* ************************ ***** ******* ****** *** consensus_1694#0 CGGGTCGGCC-AAGCGGGGCTCATGGGGAACACCACAAACATCGTCAGCACTACGTGCCA 355 consensus_1694#1 CGGGTCGGCCCAANNGGGGCTCATGGGGAACACCACAAACATCGNCAGCACTACG-GNCA 295 ********** ** ***************************** ********** * ** consensus_1694#0 GCAGAAACTGCTGCCTGATTTGCCATCTGCTGATCCACACCCACTGCCTGCTGCAGCTGC 415 consensus_1694#1 GCATAAAC----GCGCCGATGGNCATC--GCNATCCACACCCACTGCC-GCTGCA--NAG 346 *** **** ** * * **** **************** ****** consensus_1694#0 TGGCTGACATGCTGGCATGCCACATGCCTGCTGCGTGGCCTTGGCTGCTTCACCCACCCT 475 consensus_1694#1 CGGCCGACA--GCGGCA-GCCACNG--CCNCTGCGTGGCACTGGC-GCTTCANCCACCC- 399 *** **** **** ***** * ********* **** ****** ****** consensus_1694#0 GCCTGGCTGCCTGACCTGCCTGTGTGGTACTGCTGTTGCTGCTGGGGCTGACTGCGCTGC 535 consensus_1694#1 -GCCGGCG---------------------------------------------------- 406 * *** consensus_1694#0 TTCGCGCAGCCACGAAAGCAGCAGCACCGCTAGCAGCAGCGCCACCACGCGCAGGGCCCA 595 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 GAGCTTGGCCTGCGCATATGTGGCCTTCGCGTAAGTAGTAGTTGTAGCCGTACGGTGTGT 655 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 CGTCCGAATCGCTGAACGCCAGCCACTGCCCGGGGCTCACCTCCACGGCGTGCATATGGT 715 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 GCACGCGGTACAGACACCACCGGGAGCTGGCGCCGGTACCGACCGGTTCCGCCGCGCCCG 775 consensus_1694#1 ------------------------------------------------------------ consensus_1694#0 TCGCAGCCAGCGCCTGCTGCTCGTTCGCGGAAAGCGGCTGAGCTGGGCGGATGC 829 consensus_1694#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||