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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence
[CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGCGACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGTTACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGCGTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTCAGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG]
[+] EMBL BM606494 [CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGCGACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGTTACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGCGTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTCAGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG]
consensusID : consensus_1697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACGTCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGAAGTGGGCACAGGTGTATCAAGA]
[+] EMBL BM639623 [CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACGCAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATACAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGAAACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGTTTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGCCTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCCAATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGCCCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACGTCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGAAGTGGGCACAGGTGTATCAAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1697#0 CCGGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGCTCACAAAACG 60
consensus_1697#1 ------------------------------------------------------------
consensus_1697#0 CAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGATCGGGTAAGTGATCGAGC 120
consensus_1697#1 ------------------------------------------------------------
consensus_1697#0 GACGATCGGTTGGCGGGTTTTGTTTTGACTTGGGCCCGATCGGTTGGCGTCGGTGTTTGT 180
consensus_1697#1 ------------------------------------------------------------
consensus_1697#0 TACCCAGTTCCGAGCGACTCCGCAAAGGTTAGCAGCGTGCTAGTAGTGTTTGCGGGCTGC 240
consensus_1697#1 ---------CCGTGCGAATTCGCGCAAGAAGGTCGCGTTCGAATCCAGTCTCGCGCTCGC 51
*** **** * *** * * * **** * * * ** * * **
consensus_1697#0 GTACGAGTGGTTCTCTCGGTCAGGTGGGACACGACGGTTGTGCCGTTTTTGCGGTTTCTC 300
consensus_1697#1 TCACAAAACG--CAGCAAACGCACCATATCCCCACCCTATCGACGTGTTTGCGA----TC 105
** * * * * * ** * * *** ****** **
consensus_1697#0 AGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATA 360
consensus_1697#1 GGGTCACTCGTGCGGTGAGCATTGCTGCGGATACAAGGACCTACCGGAATAAAAAATATA 165
***********************************************************
consensus_1697#0 CAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGA 420
consensus_1697#1 CAGGCTAGTTTCGTGAGCCTATGTGCCAGTGACAATACAGTGTGGTTTAGAGGGCAGAGA 225
************************************************************
consensus_1697#0 AACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGT 480
consensus_1697#1 AACGACGGAGAACAACGCACCGACGGCAGTTATCTCGTGTGAAGTAAAATTTATTCCAGT 285
************************************************************
consensus_1697#0 TTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGC 540
consensus_1697#1 TTCGTGCAAGATTTGAGCAGCGACGCAACGGGAAAAATCCCAACATTTATAAAAGCCGGC 345
************************************************************
consensus_1697#0 CTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCC 600
consensus_1697#1 CTAGAGTGTATGCTTATGTGTGATTGTGTCCGGTAAGAGTGCGTGTCGACGCAGTGTGCC 405
************************************************************
consensus_1697#0 AATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGC 660
consensus_1697#1 AATGCTGTAACCGTGGCCGTTACACGTGTGTCTGTGTGTTTGTTGTGTGGAAAGCGAAGC 465
************************************************************
consensus_1697#0 CCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTG----------------------- 697
consensus_1697#1 CCTAGACCCGATCTAAGCGGTTCCGGAGACAATAGTGTTGATTCTGGGAAACGCGGCACG 525
*************************************
consensus_1697#0 ------------------------------------------------------------
consensus_1697#1 TCAACCAGCGCACTCCCAGCCCTTTCAAACGCCAAGCAGGCGGTATGTGACCAGTGGTGA 585
consensus_1697#0 ----------------------
consensus_1697#1 AGTGGGCACAGGTGTATCAAGA 607
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||