These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1708#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [CACGGGTTATTTATGAACGCTAGCCGCGAACAGATAATGAAGGACTTCCCGGGCCTGTTCCATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAAGGACAAGCAAGGAGTGGGAAGCGAAGTGCGGCGAAGGCGAAGGACGATTACACGGTAAGCGATGGCAGCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGAATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGAGCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACCAAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA] [+] EMBL AL694215 [CACGGGTTATTTATGAACGCTAGCCGCGAACAGATAATGAAGGACTTCCCGGGCCTGTTCCATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAAGGACAAGCAAGGAGTGGGAAGCGAAGTGCGGCGAAGGCGAAGGACGATTACACGGTAAGCGATGGCAGCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGAATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGAGCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACCAAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA] consensusID : consensus_1708#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence [GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCATGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCCATCACCGAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAACGGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGGAAGCGATGGCCGCGTGGAAGGCGTCGGGCGGCGGTACCGATGGAGGGGACA] [+] EMBL AL693631 [GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCATGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCCATCACCGAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAACGGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGGAAGCGATGGCCGCGTGGAAGGCGTCGGGCGGCGGTACCGATGGAGGGGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1708#0 --------------------------------------------------------CACG 4 consensus_1708#1 GTTATNTAGTCGAAGAAATCGAAGGACCGAACGCACCGAAACGGCCCTCGACCGCGTTCA 60 * consensus_1708#0 GGTTATTTATGAA--CGCTAGCCGCGAACAGATAA-TGAAGGACTTCCCGGGCCTGTTCC 61 consensus_1708#1 TGCTGTTTATGAAGCTGCTAGCCGCGAACAGATAAACGAAGGACTTCCCGGTGCCTGTCC 120 * * ******** ******************* ************** * *** consensus_1708#0 ATCACCGTAGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAAA--GGACAAGCAA 119 consensus_1708#1 ATCACCG-AGATGAGCAAGAAGGGGGGCGAGCTGTGGAAGGAGCTAACATGGACAAGAAC 179 ******* *************************************** ******* * consensus_1708#0 GGAGTGGGAA-GCGAAGTGCGGCGAAGGCGAA--GGACGATTACACGGTAAGCGATGGCA 176 consensus_1708#1 GGAGTGGGAACGCGAACGGCGGCGAAGGCTGAATGGACGATTACACGG-AAGCGATGGCC 238 ********** ***** *********** * ************** ********** consensus_1708#0 GCGTGGAAGGCGTCGGAGCGGCGCGATACCGATGGAGGGGACAACGGGACGAGAAGAGGA 236 consensus_1708#1 GCGTGGAAGGCGTCGG-GCGGCG--GTACCGATGGAGGGGACA----------------- 278 **************** ****** ***************** consensus_1708#0 ATGAAGTCGACGGCCAAGAAATCCTCCGCACTCGGCCATGAAGGGCAGCTGGGTTCAAGA 296 consensus_1708#1 ------------------------------------------------------------ consensus_1708#0 GCAAAGAGTTCATCGAAGGGGATGATTCGTCCAGCGACGAGGACACCGAAGAAGGACACC 356 consensus_1708#1 ------------------------------------------------------------ consensus_1708#0 AAGAAGTCAACAAGCAACGGAATCAACAGACAAGAA 392 consensus_1708#1 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||