cluster # 1720

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Anopheles gambiae
cluster # 1720 cluster # 1720 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1720#0 length = 572 sequences # 1

consensus_1720#1 length = 558 sequences # 1

consensusID : consensus_1720#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [CCCGAGGTTTGCGATTGCTCGACATCTACGCTCGGCCACATCTGCAGCGCTGGCATTCGAGATCCTGTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGCTGCGCAATCTGTTCAAACAAAAGCTGTTCGTGTGGGTCATGAAGAAGCTGGAGCAGAAGGTGGAACAGTACGCCGAAACGCACCTGAAAGCGCTAGCCTTTGTGCTGGCAGTACACCGGACACGGTGCTGAAAATGAACCTGTCCCAAGGTCGGCCGCATTGCTGCTTGAAGGTGTCTCGCTCATGACCGACGACCAAAAACGGAATTAACCTTGGGAAAGGCCGGTTTGAACCGGATCCGTTGCCTTGGCCGGCTTTTCCACGGCCGCCGGAAACCAAGGGGTAACCCCGAATTTTTGGTGGCAAGCGGAACCCAATTTTTGCCAACGGACCGCCTTCCATTTACCCCGGTCTTGCTTGGCGTTTAAAGCCTTGGAACCCCTTNGAGCACCCAAAGATCCTTCCAGATTGGAAAAAATACCCGCCAATCCGGGGTGGCCGCCTCCCGAGGTGTTTTTGGCTGGTTACCGC]

[+] EMBL AL694418             [CCCGAGGTTTGCGATTGCTCGACATCTACGCTCGGCCACATCTGCAGCGCTGGCATTCGAGATCCTGTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGCTGCGCAATCTGTTCAAACAAAAGCTGTTCGTGTGGGTCATGAAGAAGCTGGAGCAGAAGGTGGAACAGTACGCCGAAACGCACCTGAAAGCGCTAGCCTTTGTGCTGGCAGTACACCGGACACGGTGCTGAAAATGAACCTGTCCCAAGGTCGGCCGCATTGCTGCTTGAAGGTGTCTCGCTCATGACCGACGACCAAAAACGGAATTAACCTTGGGAAAGGCCGGTTTGAACCGGATCCGTTGCCTTGGCCGGCTTTTCCACGGCCGCCGGAAACCAAGGGGTAACCCCGAATTTTTGGTGGCAAGCGGAACCCAATTTTTGCCAACGGACCGCCTTCCATTTACCCCGGTCTTGCTTGGCGTTTAAAGCCTTGGAACCCCTTNGAGCACCCAAAGATCCTTCCAGATTGGAAAAAATACCCGCCAATCCGGGGTGGCCGCCTCCCGAGGTGTTTTTGGCTGGTTACCGC]




>consensus_1720#0
CCCGAGGTTTGCGATTGCTCGACATCTACGCTCGGCCACATCTGCAGCGCTGGCATTCGA
GATCCTGTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGCTGCGCAATCTGTTCAAACA
AAAGCTGTTCGTGTGGGTCATGAAGAAGCTGGAGCAGAAGGTGGAACAGTACGCCGAAAC
GCACCTGAAAGCGCTAGCCTTTGTGCTGGCAGTACACCGGACACGGTGCTGAAAATGAAC
CTGTCCCAAGGTCGGCCGCATTGCTGCTTGAAGGTGTCTCGCTCATGACCGACGACCAAA
AACGGAATTAACCTTGGGAAAGGCCGGTTTGAACCGGATCCGTTGCCTTGGCCGGCTTTT
CCACGGCCGCCGGAAACCAAGGGGTAACCCCGAATTTTTGGTGGCAAGCGGAACCCAATT
TTTGCCAACGGACCGCCTTCCATTTACCCCGGTCTTGCTTGGCGTTTAAAGCCTTGGAAC
CCCTTNGAGCACCCAAAGATCCTTCCAGATTGGAAAAAATACCCGCCAATCCGGGGTGGC
CGCCTCCCGAGGTGTTTTTGGCTGGTTACCGC

consensusID : consensus_1720#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 558
fasta sequence

                              [CCAGGTTTATGATCGCACGCGGCATTCGTGAGGTGGGTGAGATCTGTCGACGACATTGCCGATCTGCGTCGACCATCCTACGTCTCGGCCACATCTGCAGCGCTGGCATTCGAGAATCCTGTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGTCGTGCGCAATCTGTTCAAACAAAGAGCTGTTCTGTGTGGGTCATGAAAACTGGAGCAGACAGGTGGAACAGTACGCCGAAACGCGACCTGAAAGCGCTACCTTTGTGCTGGCAGTGTACACCGCACACAGGGTGTCTGACAACATGACACCGTGTCCCAAGGTCGCGACCGCATGCTGCTGAAGTGTCTCGTCCTCAGACCGTACGAGCAAACGAGTACTGGACAGCGTNGACGATCAGATGCTGCGCTTCACGCGCGAACAGGACCCATTTGTGCAGGACACACTTTTGGANGACGCTCATACCCGGTGATGCTTAAGCTGACTCCGTGCACCAATCTTCAATTGAAAAATACGGCATCGGGTGCGCTCGCAGTGTTCGCGTGTCACGTGTGCANAGTATCC]

[+] EMBL AL693692             [CCAGGTTTATGATCGCACGCGGCATTCGTGAGGTGGGTGAGATCTGTCGACGACATTGCCGATCTGCGTCGACCATCCTACGTCTCGGCCACATCTGCAGCGCTGGCATTCGAGAATCCTGTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGTCGTGCGCAATCTGTTCAAACAAAGAGCTGTTCTGTGTGGGTCATGAAAACTGGAGCAGACAGGTGGAACAGTACGCCGAAACGCGACCTGAAAGCGCTACCTTTGTGCTGGCAGTGTACACCGCACACAGGGTGTCTGACAACATGACACCGTGTCCCAAGGTCGCGACCGCATGCTGCTGAAGTGTCTCGTCCTCAGACCGTACGAGCAAACGAGTACTGGACAGCGTNGACGATCAGATGCTGCGCTTCACGCGCGAACAGGACCCATTTGTGCAGGACACACTTTTGGANGACGCTCATACCCGGTGATGCTTAAGCTGACTCCGTGCACCAATCTTCAATTGAAAAATACGGCATCGGGTGCGCTCGCAGTGTTCGCGTGTCACGTGTGCANAGTATCC]




>consensus_1720#1
CCAGGTTTATGATCGCACGCGGCATTCGTGAGGTGGGTGAGATCTGTCGACGACATTGCC
GATCTGCGTCGACCATCCTACGTCTCGGCCACATCTGCAGCGCTGGCATTCGAGAATCCT
GTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGTCGTGCGCAATCTGTTCAAACAAAGA
GCTGTTCTGTGTGGGTCATGAAAACTGGAGCAGACAGGTGGAACAGTACGCCGAAACGCG
ACCTGAAAGCGCTACCTTTGTGCTGGCAGTGTACACCGCACACAGGGTGTCTGACAACAT
GACACCGTGTCCCAAGGTCGCGACCGCATGCTGCTGAAGTGTCTCGTCCTCAGACCGTAC
GAGCAAACGAGTACTGGACAGCGTNGACGATCAGATGCTGCGCTTCACGCGCGAACAGGA
CCCATTTGTGCAGGACACACTTTTGGANGACGCTCATACCCGGTGATGCTTAAGCTGACT
CCGTGCACCAATCTTCAATTGAAAAATACGGCATCGGGTGCGCTCGCAGTGTTCGCGTGT
CACGTGTGCANAGTATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1720#0      ------------------------------------------------CCCGAGGTTTGC 12
consensus_1720#1      CCAGGTTTATGATCGCACGCGGCATTCGTGAGGTGGGTGAGATCTGTCGACGACATTGCC 60
                                                                        ***  **  *

consensus_1720#0      GAT-TGC-TCGACA--TCTACG-CTCGGCCACATCTGCAGCGCTGGCATTCGAGA-TCCT 66
consensus_1720#1      GATCTGCGTCGACCATCCTACGTCTCGGCCACATCTGCAGCGCTGGCATTCGAGAATCCT 120
                      *** *** *****    ***** ******************************** ****

consensus_1720#0      GTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGC--TGCGCAATCTGTTCAAACAAA-A 123
consensus_1720#1      GTCGATCGAATTTCCCCAGCTCCATCTGCCCCTGTCGTGCGCAATCTGTTCAAACAAAGA 180
                      **********************************   ********************* *

consensus_1720#0      GCTGTTC-GTGTGGGTCATGAAGAAGCTGGAGCAGA-AGGTGGAACAGTACGCCGAAACG 181
consensus_1720#1      GCTGTTCTGTGTGGGTCATGA--AAACTGGAGCAGACAGGTGGAACAGTACGCCGAAACG 238
                      ******* *************  ** ********** ***********************

consensus_1720#0      C-ACCTGAAAGCGCTAGCCTTTGTGCTGGCAGT--ACACCGGACACGGTG---CTGAAAA 235
consensus_1720#1      CGACCTGAAAGCGCTA-CCTTTGTGCTGGCAGTGTACACCGCACACAGGGTGTCTGACAA 297
                      * ************** ****************  ****** **** * *   **** **

consensus_1720#0      TG----AACCTGTCCCAAGGTCG--GCCGCATTGCTGCTTGAAGGTGTCTCGCTCATGAC 289
consensus_1720#1      CATGACACCGTGTCCCAAGGTCGCGACCGCAT-GCTGCTGAAGTGTCTCGTCCTCAGACC 356
                            * * *************   ****** ******  *  ** **   ****   *

consensus_1720#0      CGACGACCAAAAACGGAATTAACCTTGGGAAAGGCCGGTT--TGAACCGGATCCGTTGCC 347
consensus_1720#1      GTACGAGCAAACGAGTACTGGACAGCGTNGACGATCAGATGCTGCGCTTCACGCGCGAAC 416
                        **** ****   * * *  **   *   * *  * * *  **  *   *  **    *

consensus_1720#0      TTGGCCGGCTTTTCCACGGCCGCCGGAAACCAAGGGGTAACCCCGAATTTTTGGTGGCAA 407
consensus_1720#1      AGGACCCATTTGTGCAGGAC------ACACTTTTGGANGACGCTCA-TACCCGGTG--AT 467
                        * **   ** * ** * *      * **    **   ** *  * *    ****  * 

consensus_1720#0      GCGGAACCCAATTTTTGCCAACGGACCGCCTTCCATTTACCCCGGTCTTGCTTGGCGTTT 467
consensus_1720#1      GCTTAAGCTGACTCC-GTGCACCAATCTTCAATTGAAAAATACGGCATCGGGTG-CGCTC 525
                      **  ** *  * *   *   **  * *  *        *   ***  * *  ** ** * 

consensus_1720#0      AAAGCCTTGGAACCCCTTNGAGCACCCAAAG-ATCCTTCCAGATTGGAAAAAATACCCGC 526
consensus_1720#1      GCAGTGTTCG---CGTGTCACGTGTGCANAGTATCC------------------------ 558
                        **  ** *   *   *   *    ** ** ****                        

consensus_1720#0      CAATCCGGGGTGGCCGCCTCCCGAGGTGTTTTTGGCTGGTTACCGC 572
consensus_1720#1      ----------------------------------------------