These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCGTTAGCATTTATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCTCCCCCTCGCCACCCGACTGCTTTTGCTTTTGCGTGACGGTTTACTACTTAGAGCAAAAGAAGGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAACTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAATAATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAAAACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGTAGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCATCCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC] [+] EMBL BM605900 [CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCGTTAGCATTTATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCTCCCCCTCGCCACCCGACTGCTTTTGCTTTTGCGTGACGGTTTACTACTTAGAGCAAAAGAAGGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAACTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAATAATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAAAACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGTAGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCATCCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC] consensusID : consensus_1728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 347 fasta sequence [CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTTCGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT] [+] EMBL BX466217 [CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACTACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAACATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACCCACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACACAGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTTCGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1728#0 CCGCATTAATCGCATTTATGGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACT 60 consensus_1728#1 ---CAGAATCGGCACGAGGNGAAGTAGCGCTCCTCTAACGTTCCCTTCCTGCTTCATACT 57 ** * *** **************************************** consensus_1728#0 ACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAA 120 consensus_1728#1 ACCTGACCTCCCCTCACCCCCCTACACCCTCTCCCCACTGTCTGACGTTTCCTACTTAAA 117 ************************************************************ consensus_1728#0 CATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACC 180 consensus_1728#1 CATGCGCCGGAAGCATTGCCGGCTCCCCGCGCCGACAGTCAACAGCAAAAAGGCGCCACC 177 ************************************************************ consensus_1728#0 CACTGCAGTGATCGTTA--GCATTTATTTAAAGCTTATTATTATATATATACACACACAC 238 consensus_1728#1 CACTGCAGTGATCAGTATAGCATTNATTTAAAGCTTATTATTATATATATACACACACAC 237 ************* ** ***** *********************************** consensus_1728#0 AGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCCCCT---CCCCCT 295 consensus_1728#1 AGTCTGTTATATGTCATGTGTAACCATTTGCTAAAGAAGAGTGCCCCACCCGTCCCCCTT 297 *********************************************** ** **** * consensus_1728#0 CGCCACCCGACTGCTTT---TGCTTT-TGCGTGACGGTT-TACTACTTAGAGCAAAAGAA 350 consensus_1728#1 CGACACCCGACTGCATTAAACGCTTTACGCGTGACGGTAGTACTACGTTT---------- 347 ** *********** ** ***** ********** ****** * consensus_1728#0 GGGTACCCCGGCCGCTTGCAGCAACCGGGCCGCGCTTGCTTTCTATTTATTTTGGATGAA 410 consensus_1728#1 ------------------------------------------------------------ consensus_1728#0 CTTATTATCGATACGCAGGCAAAAGGCACTCGGGCTTGATGTGCTTGTTGTAAGCGAAAT 470 consensus_1728#1 ------------------------------------------------------------ consensus_1728#0 AATAGTCACTGGCAGATATAGTTTTTATTCTCCTCCTGCAACCAAAAACCAGCCGAACAA 530 consensus_1728#1 ------------------------------------------------------------ consensus_1728#0 AACACACAGTTAGGGCAATCGTAGCGGAGTGCACTATTTCCGGTGGTAAGATCAGATTGT 590 consensus_1728#1 ------------------------------------------------------------ consensus_1728#0 AGTCAACACACACACACATTAGTAGCAGCAGTTTGAGGTGCTTACCATACCCACAATCAT 650 consensus_1728#1 ------------------------------------------------------------ consensus_1728#0 CCGGCCAACGGAGCGATCAAAGCACAGCTTTAGGGCGGAGTGGAGGTATGGTACAC 706 consensus_1728#1 -------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||