These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1758#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence [TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGNGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAAGCAAAGCTTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCACAAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNATGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCATACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGGTGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACGGGACACATACTTTNTANTCACNCACGCGATCCNGGTGTATCACACGAAAGGGGACTNGGTCATTNTGTCCGGCGGACATTCCTTAGGGGGACACAAGAGCGTAATAAACCNGAACAATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACGCAGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAAACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAAAACCTAACTTTGGGA] [+] EMBL AL693925 [TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGNGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAAGCAAAGCTTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCACAAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNATGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCATACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGGTGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACGGGACACATACTTTNTANTCACNCACGCGATCCNGGTGTATCACACGAAAGGGGACTNGGTCATTNTGTCCGGCGGACATTCCTTAGGGGGACACAAGAGCGTAATAAACCNGAACAATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACGCAGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAAACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAAAACCTAACTTTGGGA] consensusID : consensus_1758#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCGAGAACAGCAACGGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTTAATTCGTGGCTGCTTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAGGAGACGGTGATTGTGTTGCTTGCGCTGGACCGAAATGTAATGCGCAGTTTCTTCCGAAGAACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCAGCGAGGCTGTCTGTCCGATTTAACGAATCAAACGTTGTGTGATGCAAGCAAAGCTTCTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGTTATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGAAGGGTTTTTGAAGTGTCGATATCATACGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTCAAGTCGTT] [+] EMBL BM590134 [CCGAGAACAGCAACGGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTTAATTCGTGGCTGCTTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAGGAGACGGTGATTGTGTTGCTTGCGCTGGACCGAAATGTAATGCGCAGTTTCTTCCGAAGAACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCTTCAGCGAGGCTGTCTGTCCGATTTAACGAATCAAACGTTGTGTGATGCAAGCAAAGCTTCTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGTTATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGAAGGGTTTTTGAAGTGTCGATATCATACGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTCAAGTCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1758#0 TCCNAGGTTAAGCAGCTCACTGCGCTCAAGAGCAACGGGATGACCGCAGTGCGCAGTATT 60 consensus_1758#1 ----------------------------------------------CCGAGAACAGCAAC 14 * * * *** * consensus_1758#0 GCAGNGCGGCATGTACAG-GACGATCGTTGTTATGTACGAACCAACACCGATGGAAGTCT 119 consensus_1758#1 GGTGTGTGGTAAGCCTTCCGAAGGAAGCTGTTACTCAAGAGTGGACGAGGATGGATATTT 74 * * * ** * * ** * * ***** * ** ** ****** * * consensus_1758#0 T-CNCGAGGCTGTACTGTCCGATTTAACGAATCAAACGTTGTGTGATAGCAA-GCAAAGC 177 consensus_1758#1 AATTCGTGGCTGC-TTGTCAGATATTCTGGAGTCAGCGTTGAAAATGAGCTGCGAAAAAG 133 ** ***** **** *** * * * * ***** *** * *** consensus_1758#0 TTCTTGAGGACTGTGAAACATGCAGTGGTAGTGACTGCGAACCGATATGTGCNNTCCCAC 237 consensus_1758#1 GAGACGGTGATTGTGTTGCTTGCGCTGG-----ACCGAAATGTAATGCGCAGTTTCTTCC 188 * ** **** * *** *** ** * * ** * ** * consensus_1758#0 AAACAGACTGTCGTTGTTACTCAATGTATCACGTCGNGGAACTTCTTTCAAANCTTGCNA 297 consensus_1758#1 GAAGA-ACACGCTTAATTGTGTACAGTGTGGTTCCCGGGAGCAGCTCAACTGCCCT-CAA 246 ** * ** * * ** * ** * * *** * ** * * * * consensus_1758#0 TGCCAGGAACACAGCANCAGGANAGGGTATACNCCCGAACGTGTTCCGANTAATNCAT-- 355 consensus_1758#1 GAGCAACGGGATGACCGCAGTGCGCAGTATTGCAGGCGGCATGTACAGGACGATCGTTGT 306 ** * * *** **** * *** * * ** * consensus_1758#0 -ACGGAGAGAAANAATTGGATGTTAATANGGCGCCGAGTCTATACAAAGGGTNCAACAGG 414 consensus_1758#1 TATGTACGAACCAACACCGATGGAAGTCTT-CAGCGAGGCTGTCTGTCCGATTTAACGAA 365 * * * * * **** * * * **** ** * * * *** consensus_1758#0 TGCAGAGGATNCCAGAGCACAAGAGGGTAACTTATAGGTAGTAGACGGACACCTAACACG 474 consensus_1758#1 T-CAAACGTTGTGTGA-TGCAAGCAA--AGCTTCTGAGGACTG---------------TG 406 * ** * * * ** **** * *** * * * * * consensus_1758#0 GGACACATACTTTNTANTCACN-CACGCGATCCNGGTGTATCACACGAAAGGGGACTNGG 533 consensus_1758#1 AAACATGCAGTG-GTAGTGACTGCAACCGATATGTGCATCCCACAAACAGACTGTCGTGT 465 *** * * ** * ** ** **** * * **** * * * * consensus_1758#0 TCATTNTGTC-CGGCGGACATTCCTTAGG--GGGACACAAGAGCGTAATAAACCNGAACA 590 consensus_1758#1 TATCAATGTAGTAGTGGGAATTCTTTAAACTGCGATGCAGAACAGCAACAGGA-AGGGTT 524 * *** * ** **** *** * ** ** * * ** * * consensus_1758#0 ATTCCCCCTTTGCTGCCACAACAGCGGGAGTTGCGGGACACTCAACAGCCTGCTACG--C 648 consensus_1758#1 TTTGAAGTGTCGATATCATA-CGGAGAAGAATGGATGTTATGCCCGAGTCTATCAAGGTC 583 ** * * * ** * * * * ** * * * ** ** * * * consensus_1758#0 AGGNTGATTACCACCCACACCCCTTGGCTCAACCACACANGCAATTGGGGCTCGGCATAA 708 consensus_1758#1 AAGTCGTT---------------------------------------------------- 591 * * * * consensus_1758#0 ACACACTCACGGGGTTACCAACAGAAGGTGTTNACAGNGACGTACTCGGGCGGAGTTAAA 768 consensus_1758#1 ------------------------------------------------------------ consensus_1758#0 AACCTAACTTTGGGA 783 consensus_1758#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||