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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence
[ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCGAGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACGCCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGGACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACTACTGCTCGCTGTATGCGACCACGCCCGAGCACTTTATGCATTACGCGTTGGCCATACCGATGTACACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATCGAGTGCTGGCCGCCGCGCTAGCGATCGATGTGCAGCCGAAACGGTCGCCCGAGGAGCTGCAGTGTCTGGCCATGATTTGCAACGAGAAAAAGTACAACGCCAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGGAGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCTGATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTGCCACGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCTCCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAAANGATACGAT]
[+] EMBL BX626170 [ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCGAGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACGCCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGGACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACTACTGCTCGCTGTATGCGACCACGCCCGAGCACTTTATGCATTACGCGTTGGCCATACCGATGTACACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATCGAGTGCTGGCCGCCGCGCTAGCGATCGATGTGCAGCCGAAACGGTCGCCCGAGGAGCTGCAGTGTCTGGCCATGATTTGCAACGAGAAAAAGTACAACGCCAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGGAGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCTGATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTGCCACGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCTCCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAAANGATACGAT]
consensusID : consensus_1766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GAAATGCCTNAGCAGAATCGGCACGAGGCTGACAAACCGATATCCGGGCACAGTACTANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCATACCGATGTAACACGCACTTGNGCAGCCCATCCGAAGGTATNCCGATTGTCTGGTGCATCGCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGAGAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGCCCCACAGGTGGTTNCAGGGGGCGAAGAGCCCAGGTTCGACTTGCCTCGGTACTTTCCNGCCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCGACNAAACCGGAAGNGGCGTGCCCGGNATCATTGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCTGGGTTGCCTTGA]
[+] EMBL BX469352 [GAAATGCCTNAGCAGAATCGGCACGAGGCTGACAAACCGATATCCGGGCACAGTACTANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCATACCGATGTAACACGCACTTGNGCAGCCCATCCGAAGGTATNCCGATTGTCTGGTGCATCGCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGAGAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGCCCCACAGGTGGTTNCAGGGGGCGAAGAGCCCAGGTTCGACTTGCCTCGGTACTTTCCNGCCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCGACNAAACCGGAAGNGGCGTGCCCGGNATCATTGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCTGGGTTGCCTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1766#0 ATGCGATCTACAAGGCATTCCCGGAAATTTCGCTACTGCGCGCCCACAGCCCGCCGGCCG 60
consensus_1766#1 ------------------------------------------------------------
consensus_1766#0 AGAACATGATGAAGAATCTCGTCCGCACGCTGTCCCTGCATGGGCACGCCCTATCGTACG 120
consensus_1766#1 ------------------------------------------------------------
consensus_1766#0 CCAGCCCGAAGGACATCCGGGAGTGTATGGAAACGATCATCACTACGTCGGAGAACCCGG 180
consensus_1766#1 ------------------------------------------------------------
consensus_1766#0 ACGCTACCCGGAGCGTGCTGAGTGTGCTGCTCGCCAAACCGATGATCCGGGCACAGTACT 240
consensus_1766#1 GAAATGCCTN-AGCAGAATCGGCACGAGGCT-GACAAACCGAT-ATCCGGGCACAGTACT 57
* ** *** * * * *** * ********* ****************
consensus_1766#0 ACTGCT---CGCTGTAT-GCGACCACGCCCGAGCACTTTATGCA-TTACGCGTTGGCCAT 295
consensus_1766#1 ANTGCGTCGNGCTGTATTGCGACCACGCCCGAGCACTTTATGCNATTACGCGTTGGGCAT 117
* *** ******* ************************* *********** ***
consensus_1766#0 ACCGATGTA-CACGCACTTCACCAGCCCCATCCGACGGTATGCCGATTGTCTGGTGCATC 354
consensus_1766#1 ACCGATGTAACACGCACTTGNGCAGCCC-ATCCGAAGGTATNCCGATTGTCTGGTGCATC 176
********* ********* ****** ****** ***** ******************
consensus_1766#0 G-AGTGCTGGCCGCCGCGCTAGC-GATC-GATGT-GCA---GCCGAAACGGTCGCCC--- 404
consensus_1766#1 GCAGTGCTGGCCGCGGCGCTAGNCGATCCGATGTTGCACGAGCGAAAACGGTCGNCCCGA 236
* ************ ******* **** ***** *** ** ********* **
consensus_1766#0 GAGGAGCT--GCAGTGTCT--GGCCATGATTTGCA-ACGAGAAAAAG-----TACAACGC 454
consensus_1766#1 GAGGAGACTAGCAGTGTCTTGGGCACTGATTTGCACACGAGGGAAAAAGAGTTACACCGC 296
****** ********* *** ********* ***** *** **** ***
consensus_1766#0 CAAGTGTGCGGGCGAGGCCAGTTCGCTGCTGTACTTCCGTCACTGGTTGGAGGCTGTGGG 514
consensus_1766#1 CCCACAGGTGGTTNCAGGGGGCGAAGAGCC-CAGGTTCGACTTGCCTCGGTACTTTCCNG 355
* * ** * * ** * * ** * * ** * *
consensus_1766#0 AGAGTACGAAACGGAGGCTGCCGTTATGGGATATGCCGCCCATCATATCGAGCTGGTGCT 574
consensus_1766#1 CCAACGTGGGATNTGGGAAGGGCTTGCTGGGGAAGAAAGTTACCG-ACNAAACCGGAAGN 414
* * * ** * ** ** * * * * * * * **
consensus_1766#0 GATACACTCCGGCATTGTGCTGAAGGCTGCCACTAAGAAACTGTCCACCGTTG----CCA 630
consensus_1766#1 GGCGTGC-CCGGNATCAT-TGGGGAGTTATTGCCCGGNGCCCATCAGTATTCGGAGGCCT 472
* * **** ** * * * * * * * ** * * **
consensus_1766#0 CGGTCGTCTATAAACCGACCGAACCGGTCGCGAGCTGCATGCTGATTCCGAACGATACCT 690
consensus_1766#1 GGGTTGCCTTGA------------------------------------------------ 484
*** * ** *
consensus_1766#0 CCATACCACCGGTCGAGTTGACAATCTTTACCAAGGTCCGTGTCACGGTAAAGGTCATAA 750
consensus_1766#1 ------------------------------------------------------------
consensus_1766#0 ANGATACGAT 760
consensus_1766#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||