These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_177#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGAAGAGCGCAAGCCAAACCGTGAGCACTTCTTTGAGAAGCAGCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGACAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGAGAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC] [+] EMBL BM590594 [CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGCCCGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAACAATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAATACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTACTTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGCAACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTTGATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCCAACTCGTCCTCGTCGGAAGAGCGCAAGCCAAACCGTGAGCACTTCTTTGAGAAGCAGCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGACAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGAGAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC] consensusID : consensus_177#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [CCGACCCGATCGTGTGCGTAACATTAGCCGGCATCGCGAATAAATGAACACGTTTTAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTAAACAGGAATGAACGACAAATGAACTCGGTTAAATTAACGAGCGTCAAAACAGTTAACGACTGCTCGATATCGCATATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACTGTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGTCGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTAGCAATTTTTAACGACTCTGGTTAATTTTTAACGACTGTTAATTTTAAACCAATTCTTTCGCGATACCAGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAGGAGCTAGACTATAATCTAGTTCGGTTGTGTTTTTTTTCTTTCTGGCGAATAACAACAACGTTCACAGAGTAAACTAATTCCAATAATAAAAATCGTATTG] [+] EMBL BM629986 [CCGACCCGATCGTGTGCGTAACATTAGCCGGCATCGCGAATAAATGAACACGTTTTAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTAAACAGGAATGAACGACAAATGAACTCGGTTAAATTAACGAGCGTCAAAACAGTTAACGACTGCTCGATATCGCATATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACTGTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGTCGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTAGCAATTTTTAACGACTCTGGTTAATTTTTAACGACTGTTAATTTTAAACCAATTCTTTCGCGATACCAGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAGGAGCTAGACTATAATCTAGTTCGGTTGTGTTTTTTTTCTTTCTGGCGAATAACAACAACGTTCACAGAGTAAACTAATTCCAATAATAAAAATCGTATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_177#0 CCGCCCACGCGTCCGCCCACGCGTCCGCGACATCAAGATCGTGTTCGACGGATACCGTGC 60 consensus_177#1 ---CCGACCCGATCGTGTGCGTAACATTAGC--CGGCATCGCGAATAAATGAACACGTTT 55 ** ** ** ** ** * * * **** * * ** *** consensus_177#0 C--CGTTTCTTCGCCGACCAGTCGTACTTCAACAACTTCGTCGGTCTTTGCGGTACCAAC 118 consensus_177#1 TAACAGTCGTTTAAAGTTCATTTTGGTTTAACCGAGTTCATTTGTCGTTAATTTA--AAC 113 * * ** * ** * ** * * * *** * *** ** ** *** consensus_177#0 AATGGCGAAGGAGAGGACGACTTCATCACCCCCGACCAGTGCGTCATGCGCAAGCCTGAA 178 consensus_177#1 AGGAATGAACGACAAATGAACTCGGTTAAATT-AACGAGCGTCAAAACAGTTAACGACTG 172 * *** ** * *** * * ** ** * * * * * consensus_177#0 TACTTTGCCGCTTCGTACGCGCTCACCGGCATGAACTGCAGTGGGCCGGCTCAGGCCTAC 238 consensus_177#1 CTCGATATCGCAT-ATAGGCAAACACGGGGAAAAAAATCGAGCAGTATAATTAAACGACT 231 * * *** * ** ** *** ** * ** * * * * * consensus_177#0 TTCACCGAGTACCACCAGAAGGCTCAGCAGCACTGCGTCAAGCCCCAGTACTACTTCGGC 298 consensus_177#1 GTTAATTTGCATCGCATACGCTCTTGACAGTCGTTTGTTTAACGGCGGCATATGACCAGT 291 * * * * * * ** *** * ** * * * * * * * consensus_177#0 AACGTCATCAGCGAGCAGGAAGCCGGACGTCAGCGTTACAACTACTACTACAAGGACTTT 358 consensus_177#1 --CGTTAAAATTAACAAATGAACTCAATGCGATCGCGATGCCAAATTCTA-GCAATTTTT 348 *** * * * * * * * * * ** * * * * *** *** consensus_177#0 GATCTTTCGGACTCATCCTCGTCCGAGTCTTCGTCGTCGTCGGATGAATCTGATGATTCC 418 consensus_177#1 AACGACTCTGGTTAATTTTTAAC-GACTGTTAATTTTAAACCAATTC-TTTCGCGATACC 406 * ** * * ** * * ** * ** * * * ** * * *** ** consensus_177#0 AACTCGTCCTCGTCGGAAGAGCGCAA----GCCAAACCGTGAGCACTTCTTTGAGAAGCA 474 consensus_177#1 AGCTATTGTTTGACGTGAGACGACGGCATTGCGAAATCGTCGTCATTCCGTTTACGCAAG 466 * ** * * * ** *** * ** *** *** ** * * ** * consensus_177#0 GCAATACACCGAAAAGGAGTGCCCCGTGAAATACCAGGCTCAGTACGTCGAGCAGGGTGA 534 consensus_177#1 GAGCTAGACTATAATCTAGT--TCGGTTGTGT-TTTTTTTCTTTCTGGCGAATA--ACAA 521 * ** ** ** *** * ** * ** * * *** * * consensus_177#0 CAAGATTTGCTTCACTAGCCGTCCGCTCCCAACTTGCGCTTCGCAATGCAAGGCTACCGA 594 consensus_177#1 CAACGTTCACAGAGTAAACTA---ATTCCAATAATAAAAATCGTATTG------------ 566 *** ** * * * *** * * *** * ** consensus_177#0 GAAGGCTCCCAAGTACGTCGATGTCCACTGCCGTGACGC 633 consensus_177#1 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||