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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG]
[+] EMBL AL694006 [ATCGCCGAGGTTACTTGGTCCCGCTGCCAAAGCATGATAATACAAACGGATTNTTGCTGGAAAAATCGCAATCCGTNCGAGACATTCTGCAAATGGCATTTGATCTTTGTCCGGAAGAGATCCAAGATGCTGAAACAATGGAACATCAGATAATCTGTCAAGAGGCTGGAGGAGCGATTCGGGGAGTCGACGAGACTGGAACCGGACCGATGCAGGGAATTGTCAACGAACCCGAAAAGTCTCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATATCTGGCGGTACACATACGAATCCACCATCTTCAGCTCCCGGCACCGGCGAAGTATTGGGATGCGGCGATGGCCATAACGGCCCAAATACCGATTCTAGTGCAGNGGTGTGCTGATCATGGCAAATCAAACATTTCCCCAAGCGTGAAGCAACTAACTGAGGGTAATATCTAACATTGATATTAACTCCGATGGCCAATCGGAACAGCAGGCGCAACAGTAATCAACATCGGTGTCACCGGGAAGTAATGCTGGCCAACAACAAACGGTACATACGACGCCTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGACAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCTGCACAGTAGCCAAAGG]
consensusID : consensus_1771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA]
[+] EMBL BX468431 [AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGCTGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCCGGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCTGCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGTCAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCCGTGATGGGAATATCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATATCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGGTGTGCTGATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTATCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTGATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNAACNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1771#0 ATCGCCGAGGTTA-CTTGGTCCCGCTGCC--AAAGCATGATAATACAAACGGATTNTTGC 57
consensus_1771#1 AGGGCAAGAATCGGCACGNTGGGCCTGCCCAAGAGCATGATAATACAAACGGATTTTTGC 60
* ** * * * * ***** * ********************** ****
consensus_1771#0 TGGAAAAATCGCAATCCGTNCGAGAC---ATTCT-GCAAATG-GCATTTGATCTTTGTCC 112
consensus_1771#1 TGGAAAAATCGCAATCCGTTACGTACTATATTCTAGCAAATGTGCATTTGATCTTTGTCC 120
******************* ** ***** ******* *****************
consensus_1771#0 GGAAG-AGATCCAAG-ATGCTGAAACAATGG-AACATCAGATAAT-CTGTCAAG-AGGCT 167
consensus_1771#1 GGAAGCAGATCCAAGGATGCTGAAACAATGGGAACATCAGATAATTCTGTCAAGCAGGCT 180
***** ********* *************** ************* ******** *****
consensus_1771#0 G--GAGGAGCGA-TTCGGGGAG-TCGACGAGACTGGAACCGGACCGATGCAGGGAATTGT 223
consensus_1771#1 GCGGAGGAGCGACTTCGGGGAGATCGACGAGACTGGAACCGGACCGATGCAGGTAATTGT 240
* ********* ********* ****************************** ******
consensus_1771#0 CAACGAA--CCCGAAAAGTC-TCAAGCAAATATCCCCTATTGTATCCTGTGATGGGAATA 280
consensus_1771#1 CAACTGAATCCCGAAAAGTCGTCAACANAATATCCCCTATTGTATCC-GTGATGGGAATA 299
**** * *********** **** ******************* ************
consensus_1771#0 TCTGGCGGTACACATACGAA--TCCAC-CATCTTCAGCTCCCGGCACCGGCGAAG---TA 334
consensus_1771#1 TCTGGCGGTACACATAGCAAGATCCAGGCATCTTCAGCTCCCGGNACCGGCGAAGGTATA 359
**************** ** **** **************** ********** **
consensus_1771#0 TTGGGATGCGGCGATGG-CCATAACGGCCCAAATACCGA-TTCTAGTGCAGNGGTGTGCT 392
consensus_1771#1 TCGGGATGCGGCGATGNGCCATAACGGCCCAAATACCGAGTTCTAGTGCAGGG-TGTGCT 418
* ************** ********************* *********** * ******
consensus_1771#0 GATCATGGCAAATC--AAACAT-TTCCCCAAG-CGTGAAGCAACTAACTGAGGGTAA-TA 447
consensus_1771#1 GATCATGGCAAAGTCGAAACATGTTCCCCAAGGCGTGAAGCAGCGTAATGAGGGTCACTA 478
************ ****** ********* ********* * * ******* * **
consensus_1771#0 TC-TAACATTGA----TATTAACTCCGATGGCCAA-TCGGAACAGC-AGGCGCAACAGTA 500
consensus_1771#1 TCGTAACATTGAGTACTNTAANTCCGGATGGCCAAATCGGAACAGCCAGGCGAAGCAGTG 538
** ********* * * * * ********* ********** ***** * ****
consensus_1771#0 ATCAACATCGGTGTCACCGGGAAGTAA-TGCTGGCCAACAACAAACGGTACATACGACGC 559
consensus_1771#1 ATCGAAATCGGTGTCACCGGGAAGTAAATGCTGGCCNA--ACNA---------------- 580
*** * ********************* ******** * ** *
consensus_1771#0 CTGCAGCTGTGGTATCTCCTGCGACGCAAACGACAACCCCAGCCACCACTACACCACAGA 619
consensus_1771#1 ------------------------------------------------------------
consensus_1771#0 CAACCTCGCCGAATACTGTGCCCAAAAAGATCGCACAGGCCGCCCGGTGATGGACAGCCT 679
consensus_1771#1 ------------------------------------------------------------
consensus_1771#0 GCACAGTAGCCAAAGG 695
consensus_1771#1 ----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||