These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1774#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [AGGCGATCAGGTGAAAAAAGCGCACGGATTGAAGGATGAATTTTACGAGGATATGTTCAGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACAGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATATATCACATGTCCGGCACGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGTTATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCATGATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACGGCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC] [+] EMBL BX620420 [AGGCGATCAGGTGAAAAAAGCGCACGGATTGAAGGATGAATTTTACGAGGATATGTTCAGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACAGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATATATCACATGTCCGGCACGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGTTATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCATGATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACGGCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC] consensusID : consensus_1774#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGATATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAATATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACCAGGTGCCGAACTGTCGCACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTAC] [+] EMBL AL694022 [AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGATATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCCCAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTACCACAATATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAGGCTGCGATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACCAGGTGCCGAACTGTCGCACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTCGACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGATGATCCTTGGGCAGTTGTCGATCCGAAGCTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1774#0 ----AGGCGATCAGGTGAAAAAAGCGCACGGATTGAA--GGATGAA--TTTTACGAGGAT 52 consensus_1774#1 AGGCCAGAAATTCTGCGCCCGCAGGTTNTTTATTGGAAGGGATGGAATTTTTACGAGGAT 60 * ** * * ** **** * ***** * ************ consensus_1774#0 ATGTTCAG-CTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCC 111 consensus_1774#1 ATGTTCAGGCTCGATCAACAATCAGGATGTATTTGGCGTGTTTCCGATGATGTTGCGTCC 120 ******** *************************************************** consensus_1774#0 CAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTA 171 consensus_1774#1 CAAAAGCCGGGGCTTCATTCGGTTGCAGTCTCGCAATCCGTTGCGTTATCCTTTGCTTTA 180 ************************************************************ consensus_1774#0 CCACAACTATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAAAGGCTGC 231 consensus_1774#1 CCACAA-TATCTCACCCATCCGGATGATGTGGGCGTGTTGCGCGAGGGCGTAA-GGCTGC 238 ****** ********************************************** ****** consensus_1774#0 GATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAAC- 290 consensus_1774#1 GATAGCATTCGGCGAAACACAGGCCATGAAACGGTTTGGCGCTCGCTTCCACAGTAAACC 298 *********************************************************** consensus_1774#0 AGGTGCCGAACTGTCGCCACCTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTC 350 consensus_1774#1 AGGTGCCGAACTGTCGC--ACTACCGGAGTTTACCGATGAGTATTGGGACTGCGCCATTC 356 ***************** **************************************** consensus_1774#0 GACAGTACACGATGACTATATATCACAT-GTCCGGCACGG-CAAAGATGGGTCCCCCAGA 408 consensus_1774#1 GACAGTACACGATGACTATCTATCACATTGTCCGGCACGGGCAAAGATGGGTCCCCCAGA 416 ******************* ******** *********** ******************* consensus_1774#0 TGATCCTTGGGCAGTTGTCGATCCGAAGCTACGCGTCTACGGTATTAAGGGGCTGCGAGT 468 consensus_1774#1 TGATCCTTGGGCAGTTGTCGATCCGAAGCTAC---------------------------- 448 ******************************** consensus_1774#0 TATAGATGCTAGCATAATGCCGCGCATCACAAGCGGTAACATCAACGCACCGGTCATCAT 528 consensus_1774#1 ------------------------------------------------------------ consensus_1774#0 GATTGGAGAGAAGGGTGCCGATATGATCAAAGAGCTGTGGTTGATGAAGGGTCACTCACG 588 consensus_1774#1 ------------------------------------------------------------ consensus_1774#0 GCGANGGAAGCGTCAACAGTTTGCGAACGAAACGCTTAGTGCCGCC 634 consensus_1774#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||