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Anopheles gambiae
cluster # 1779 cluster # 1779       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1779#0 length = 1482 sequences # 1  
consensus_1779#1 length = 751 sequences # 1  

consensusID : consensus_1779#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1482
fasta sequence
                              [CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG]

[+] EMBL AL694058             [CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG]


>consensus_1779#0 CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTAT TGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGC TGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAA ACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGG GGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCA CACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACT GCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCG GACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCT CGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAA CCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGAT TACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATT GGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCC ATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGA AANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTA GCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCG TCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTG GTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCG CNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGC GCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGG CCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCG CCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACG CCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNT ATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGC ATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACC NGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG



consensusID : consensus_1779#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 751
fasta sequence
                              [GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT]

[+] EMBL BX625379             [GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT]


>consensus_1779#1 GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATA TAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGT CACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGG GGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCAC CCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAA AAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAA GGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTG GGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCT GAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGA AGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATT ATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAG CCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTT GGGTTTATTTTTGCATGGGTCATTGNCTAAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1779#0      CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTAT 60
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      TGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGC 120
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      TGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAA 180
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      ACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGG 240
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      GGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCA 300
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      CACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACT 360
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      GCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCG 420
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      GACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCT 480
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      CGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAA 540
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      CCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGAT 600
consensus_1779#1      ------------------------------------------------------------
                                                                                  

consensus_1779#0      TACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATT 660
consensus_1779#1      --------------GAACAT-CCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCC----- 40
                                     ****   *  *   ***  ** ****  * ** *   ***     

consensus_1779#0      GGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCC 720
consensus_1779#1      -AACACCCTG-ATAGCTGTATATAAGATATCGTGTCTCTACGTGTACG------TCCTTC 92
                          **  *     ** * *         * * *    * * *  ***      * *  *

consensus_1779#0      ATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGA 780
consensus_1779#1      CTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCG---GC 149
                       *** **  * *** ****   * *   * *  *  **   * **** *  * *    * 

consensus_1779#0      AANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTA 840
consensus_1779#1      AATGCGC-----CGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGG-- 202
                      ** ** *     * * *** ** **  *    ***   *           *  *   *  

consensus_1779#0      GCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCG 900
consensus_1779#1      ACTAAATGTGCCGAATAACGACTGCT---------ATTCGCATCCACCCCAC---TCCCG 250
                       * ***   **  ** ***    **            *  * *** *** **    ****

consensus_1779#0      TCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTAC-TATCCCTTAGT 959
consensus_1779#1      CCTCCCTCC------------CCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAA 298
                       *  *****            *  * **  *   * *    *   *   * *** ***  

consensus_1779#0      GGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCC 1019
consensus_1779#1      AAAAAGGTGAACCGGCGCTATA---TGTACGTATGACATCAGCAACAG----GGCACATC 351
                               *  *    *** *    * * ***  ****** **  **     *  *  *

consensus_1779#0      GCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTG 1079
consensus_1779#1      AGTTAGCAAGGGAAGGGAAGAACGAAGCTTT-----ATTGAAGGTGA--AGCGAATTC-- 402
                         *   **   *   * * ***     * *         * *   *  * * **  *  

consensus_1779#0      CGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGG 1139
consensus_1779#1      --------------GAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTA-GA 447
                                    *    *** ** **   * * ***  *   ***     * * * * 

consensus_1779#0      GCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGC 1199
consensus_1779#1      ATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGA---TAAACACACACACAC 504
                         *   ****  *    *  **   * *  * * * **          * *   *   *

consensus_1779#0      GCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAAC 1259
consensus_1779#1      ACCCACACATACACATAT-ACATACGCGCATCTGCGAAGAAAG-GCGTGGGGTTTACAAT 562
                       *** * *  * ****   *    *    ***  * *  *    * ***      **** 

consensus_1779#0      GCC-CCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCT 1318
consensus_1779#1      AATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGAT 622
                          *  *  *    **   *    * *            **** ** *        * *

consensus_1779#0      NTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGA 1378
consensus_1779#1      A-ATGAAGCTGCTGCTGCTGGTA-ATGCAGATGATGGTAGCCGATGGCGGCAAC-GTGCA 679
                        ** *  ***  *   *    * *   * * * *     **  * * * ** * * * *

consensus_1779#0      GCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACA 1438
consensus_1779#1      GTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGG 739
                      * *  *  * *  *    * ** *    * *  *                 *   *    

consensus_1779#0      CCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG 1482
consensus_1779#1      TCATTGNCTAAT-------------------------------- 751
                       *  *     **                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)