These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1779#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1482 fasta sequence [CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG] [+] EMBL AL694058 [CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTATTGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGCTGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAAACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGGGGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCACACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACTGCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCGGACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCTCGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAACCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGATTACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATTGGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCCATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGAAANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTAGCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCGTCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTACTATCCCTTAGTGGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCCGCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTGCGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGGGCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGCGCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAACGCCCCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCTNTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGAGCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACACCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG] consensusID : consensus_1779#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence [GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT] [+] EMBL BX625379 [GAACATCCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCCAACACCCTGATAGCTGTATATAAGATATCGTGTCTCTACGTGTACGTCCTTCCTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCGGCAATGCGCCGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGGACTAAATGTGCCGAATAACGACTGCTATTCGCATCCACCCCACTCCCGCCTCCCTCCCCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAAAAAAAGGTGAACCGGCGCTATATGTACGTATGACATCAGCAACAGGGCACATCAGTTAGCAAGGGAAGGGAAGAACGAAGCTTTATTGAAGGTGAAGCGAATTCGAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTAGAATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGATAAACACACACACACACCCACACATACACATATACATACGCGCATCTGCGAAGAAAGGCGTGGGGTTTACAATAATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGATAATGAAGCTGCTGCTGCTGGTAATGCAGATGATGGTAGCCGATGGCGGCAACGTGCAGTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGGTCATTGNCTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1779#0 CAAGAATTGCCCCGAGGTTTGCACATCAGTTAGCATGTGAAGGGAAGAACGAAGCTTTAT 60 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 TGAAGTGTGAAGCGAATTCGAAACGGCACCTGCCGTTGGTGTAAATGACGAATGAAATGC 120 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 TGAGCTAGAATGTGCTTGCAATGCCCTGTGCATAAACATACAGAGTCTGAGACTAGATAA 180 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 ACACACACACACCCACACATACACATATACATACGCGCACTCTGCGAAGAAAGGCGCTGG 240 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 GGTTTACAATAATGCTAATTACTTACATTACACTACCAATAACTAACTACACTTACTTCA 300 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 CACACTAACTACACTAACTACACTTGATTCACTGAAGCTGCTGCTTGCTGCTGGCTAACT 360 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 GCAGCACTGACTGGTAAGCCCTGACTGGCGGCAAACCGGCTTGCCCANGCTTAACCACCG 420 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 GACTCCGCGGCACTTACAACGGAAGCGCTAANACTGGTTGCGACGGACGCTTGAAAGGCT 480 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 CGCGCGTANCTCACTACCTCNTCTGGCCACTTGGGGCTCNACACCTCNTGGCTCCTTAAA 540 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 CCTCCTCCTNACAAAACAACCTTGGGTTACGGCTCCACGGGGCGCCCTTGGNTACGCGAT 600 consensus_1779#1 ------------------------------------------------------------ consensus_1779#0 TACACNTCTCAGCGNAACACANCCCANAGACCCGAGCCTAACAGAAACCCTGGCCCTATT 660 consensus_1779#1 --------------GAACAT-CCGAAGGAACCTAAGACTAAGCGTAAGCAGAGCC----- 40 **** * * *** ** **** * ** * *** consensus_1779#0 GGGTACTTTCTGGGGCCGCAGGCGGCGGCTGGCGCGGTTCCNTCCACGACCCACTNCGCC 720 consensus_1779#1 -AACACCCTG-ATAGCTGTATATAAGATATCGTGTCTCTACGTGTACG------TCCTTC 92 ** * ** * * * * * * * * *** * * * consensus_1779#0 ATCCTTTNTGGCAACGCAATTGGCGTAACTCCCCCCGGCCTANACACCCCCGTCCCGTGA 780 consensus_1779#1 CTCCCTTTGGACAAAGCAAACCGGGGGTCACAGCAGGGGTCAAACACGCTTGGCG---GC 149 *** ** * *** **** * * * * * ** * **** * * * * consensus_1779#0 AANGCCCCCACACAGGCGGNCCACAGTCAACGCCGAAAACGGCCTTGGTCGGCTCAAGTA 840 consensus_1779#1 AATGCGC-----CGGCCGGACCTCAAACCCTACCGGGGATCATACAATATGTGTGTGG-- 202 ** ** * * * *** ** ** * *** * * * * consensus_1779#0 GCGAAACTCGCGAAAAAACNTTGGCCCGGCTTTTGGCTTCCNTCCGCCCAACGTCCCCCG 900 consensus_1779#1 ACTAAATGTGCCGAATAACGACTGCT---------ATTCGCATCCACCCCAC---TCCCG 250 * *** ** ** *** ** * * *** *** ** **** consensus_1779#0 TCAACCTCCAACCGCAACACGCTCCTCACCCAACGGGCACATCNCTAC-TATCCCTTAGT 959 consensus_1779#1 CCTCCCTCC------------CCACGCATTCGGTGTGTGTGTGTGTGTGTGTCCGTTAAA 298 * ***** * * ** * * * * * * *** *** consensus_1779#0 GGTGCACCTAGGCATTACTACAACGCGGAAGTACCACATCACCAGGAGCCTANGAGCCCC 1019 consensus_1779#1 AAAAAGGTGAACCGGCGCTATA---TGTACGTATGACATCAGCAACAG----GGCACATC 351 * * *** * * * *** ****** ** ** * * * consensus_1779#0 GCNTTANAACCAAGACGCAAAACAGCATTCTCCACNNCCCAGGACAACAAACAAANACTG 1079 consensus_1779#1 AGTTAGCAAGGGAAGGGAAGAACGAAGCTTT-----ATTGAAGGTGA--AGCGAATTC-- 402 * ** * * * *** * * * * * * * ** * consensus_1779#0 CGCACGCACAAACAGTGGTGGCGCCCCCAAAGAGCAAANCCTTNTGACGTTAACCCATGG 1139 consensus_1779#1 --------------GAAACGGCACCGCCGTTGGGTAAAGACGAATGAAAGCGAGCTA-GA 447 * *** ** ** * * *** * *** * * * * consensus_1779#0 GCCGTCGGCAAAACGNCCTTNAACGGACAAACGGCGCCTTTCCCCNTNCCNCGAGCGAGC 1199 consensus_1779#1 ATGGCTTGCAAGCCTGGATAAAATACAGAGTCTGAGACTAGA---TAAACACACACACAC 504 * **** * * ** * * * * * ** * * * * consensus_1779#0 GCCCCCCCCAAAACATCNGATGGCCCTATATCCCCCANAAGCCTGTGTGACCCCCACAAC 1259 consensus_1779#1 ACCCACACATACACATAT-ACATACGCGCATCTGCGAAGAAAG-GCGTGGGGTTTACAAT 562 *** * * * **** * * *** * * * * *** **** consensus_1779#0 GCC-CCGACAACACTTTTTTCGGNGAGTCCCCCCCCCCGAAAAACAAAANAGCCCCCGCT 1318 consensus_1779#1 AATGCTAATTATTAATTACACTACCAATAATAATAATTATAAAATAATAATAATAATGAT 622 * * * ** * * * **** ** * * * consensus_1779#0 NTATCATTCTGGGGNCCCCCCCACAAAAAAACGCTTTCCCCCTTTTGGGTCAGCAGGGGA 1378 consensus_1779#1 A-ATGAAGCTGCTGCTGCTGGTA-ATGCAGATGATGGTAGCCGATGGCGGCAAC-GTGCA 679 ** * *** * * * * * * * * ** * * * ** * * * * consensus_1779#0 GCATTCACTNGTGTCGNAANCGCANCAAGTAGAAACCCCCCNCCCGCGGAGTATAACACA 1438 consensus_1779#1 GTACACGGTCGGATAAAGAGCGTAATGTGGANGAGTGAGTTGGGTTTATTTTTGCATGGG 739 * * * * * * * ** * * * * * * consensus_1779#0 CCNGTTCTANATCATCCAACAGAANGGTGCTCCCGACACAGTAG 1482 consensus_1779#1 TCATTGNCTAAT-------------------------------- 751 * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||