cluster # 1782

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Anopheles gambiae
cluster # 1782 cluster # 1782 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1782#0 length = 675 sequences # 1

consensus_1782#1 length = 641 sequences # 1

consensusID : consensus_1782#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence

                              [CCGCCCACGCGTCCGCGCAGGGAAAAACATCCTGCTCGGCAACAACAACAACAGCGGCAGTGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAGTCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCACCAGCGGAAGCAGCAGCAGCAGCAATATGGCGTCCGACCGCAGTGGAACGGCCGGTGCACTCGCACTAGTGACCGGAGGGGCCGCCACCACCGTGGTCAATGCAGCCGTGCCATCGTCACCGTCCTCGTCCTCATCCTCCTCCTCCTCCCCGGCATCGATCGGTGCTCCTACCAACAGCAGCGCCGGTGGTGGTATGCTGGTGGTGACGGATCGTAACGGAACCGCCACCACGACGACCACGGGCAAGCTGGTGCTGCTGCATCAGGGGCGCGCGGGCGAAGATTATATAACAACGACGGGCGAAACGATCAACGGTGGCAACATCGTGCTGCTGGCAACGGAGCAGATGGACATGGCCGAGCACGACATCATTAACAACAACGTTATCATCAGCACCGCGGGTGGCACGACGCGCACCGTCGCGCTGCCCGCTCATCCCGCCCA]

[+] EMBL BM634777             [CCGCCCACGCGTCCGCGCAGGGAAAAACATCCTGCTCGGCAACAACAACAACAGCGGCAGTGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAGTCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCACCAGCGGAAGCAGCAGCAGCAGCAATATGGCGTCCGACCGCAGTGGAACGGCCGGTGCACTCGCACTAGTGACCGGAGGGGCCGCCACCACCGTGGTCAATGCAGCCGTGCCATCGTCACCGTCCTCGTCCTCATCCTCCTCCTCCTCCCCGGCATCGATCGGTGCTCCTACCAACAGCAGCGCCGGTGGTGGTATGCTGGTGGTGACGGATCGTAACGGAACCGCCACCACGACGACCACGGGCAAGCTGGTGCTGCTGCATCAGGGGCGCGCGGGCGAAGATTATATAACAACGACGGGCGAAACGATCAACGGTGGCAACATCGTGCTGCTGGCAACGGAGCAGATGGACATGGCCGAGCACGACATCATTAACAACAACGTTATCATCAGCACCGCGGGTGGCACGACGCGCACCGTCGCGCTGCCCGCTCATCCCGCCCA]




>consensus_1782#0
CCGCCCACGCGTCCGCGCAGGGAAAAACATCCTGCTCGGCAACAACAACAACAGCGGCAG
TGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAGTCGCAGCA
CCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACCAACCACTA
CCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCACCAGCGGAAG
CAGCAGCAGCAGCAATATGGCGTCCGACCGCAGTGGAACGGCCGGTGCACTCGCACTAGT
GACCGGAGGGGCCGCCACCACCGTGGTCAATGCAGCCGTGCCATCGTCACCGTCCTCGTC
CTCATCCTCCTCCTCCTCCCCGGCATCGATCGGTGCTCCTACCAACAGCAGCGCCGGTGG
TGGTATGCTGGTGGTGACGGATCGTAACGGAACCGCCACCACGACGACCACGGGCAAGCT
GGTGCTGCTGCATCAGGGGCGCGCGGGCGAAGATTATATAACAACGACGGGCGAAACGAT
CAACGGTGGCAACATCGTGCTGCTGGCAACGGAGCAGATGGACATGGCCGAGCACGACAT
CATTAACAACAACGTTATCATCAGCACCGCGGGTGGCACGACGCGCACCGTCGCGCTGCC
CGCTCATCCCGCCCA

consensusID : consensus_1782#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 641
fasta sequence

                              [CCGCAACGATAGCACCGACAGTACCAGTGTCCATCATCTAATTGCGGAAGAATCGATCGAGGAAGAGTTGCTGGAGGAGGAAACGCTGCTCGAGCCGGCGGAAACGATCGTCGGAGATCACGTGACGGTCGAGACGTCGTCGCCGGTGCCAAGTCCCGGCGCGGAAACGACACTGTCCGCCTGCCCGCTCGGTGGCGCTGGTATGACCGAGGGTCCCGCCGCCAGCAAGGCAACCACCGGCACCAGCATGGTGCTGTCCGCGATCCCCCTGGACCAGTCCATCATGCATCAGCAAATTCTGCACCTGCACCAGCAGCAGCAGCAGCAGCAACACAGTGTGAACCATACGATCAACAACAATAATACGAGCTTCAAAAATCACAACAGTAGCCACGCAGGGAAAAACATCCTGCTCGGCAACAACAACAACAGCGGCAGTGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAGTCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCACCACCGGAAGCAGCAGCAGCAGCAGCAATATGG]

[+] EMBL BM637830             [CCGCAACGATAGCACCGACAGTACCAGTGTCCATCATCTAATTGCGGAAGAATCGATCGAGGAAGAGTTGCTGGAGGAGGAAACGCTGCTCGAGCCGGCGGAAACGATCGTCGGAGATCACGTGACGGTCGAGACGTCGTCGCCGGTGCCAAGTCCCGGCGCGGAAACGACACTGTCCGCCTGCCCGCTCGGTGGCGCTGGTATGACCGAGGGTCCCGCCGCCAGCAAGGCAACCACCGGCACCAGCATGGTGCTGTCCGCGATCCCCCTGGACCAGTCCATCATGCATCAGCAAATTCTGCACCTGCACCAGCAGCAGCAGCAGCAGCAACACAGTGTGAACCATACGATCAACAACAATAATACGAGCTTCAAAAATCACAACAGTAGCCACGCAGGGAAAAACATCCTGCTCGGCAACAACAACAACAGCGGCAGTGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAGTCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCACCACCGGAAGCAGCAGCAGCAGCAGCAATATGG]




>consensus_1782#1
CCGCAACGATAGCACCGACAGTACCAGTGTCCATCATCTAATTGCGGAAGAATCGATCGA
GGAAGAGTTGCTGGAGGAGGAAACGCTGCTCGAGCCGGCGGAAACGATCGTCGGAGATCA
CGTGACGGTCGAGACGTCGTCGCCGGTGCCAAGTCCCGGCGCGGAAACGACACTGTCCGC
CTGCCCGCTCGGTGGCGCTGGTATGACCGAGGGTCCCGCCGCCAGCAAGGCAACCACCGG
CACCAGCATGGTGCTGTCCGCGATCCCCCTGGACCAGTCCATCATGCATCAGCAAATTCT
GCACCTGCACCAGCAGCAGCAGCAGCAGCAACACAGTGTGAACCATACGATCAACAACAA
TAATACGAGCTTCAAAAATCACAACAGTAGCCACGCAGGGAAAAACATCCTGCTCGGCAA
CAACAACAACAGCGGCAGTGGCACAGTTACACACCAAATTGTGCATCCACACCACCACCA
CCAGCAGCAGTCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGG
TAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGT
CAACACCACCACCGGAAGCAGCAGCAGCAGCAGCAATATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1782#0      CCGCCCACGCGTCCGCGCAGGGAAAAACATCCTGC-TCGGC-AACAACAACAACAGCGGC 58
consensus_1782#1      ---CCGCAACGATAGCACCGACAGTACCAGTGTCCATCATCTAATTGCGGAAGAATCGAT 57
                         **    **   ** * *  *  * **   * * **  * **   *   *  * **  

consensus_1782#0      AGTGGCACAGTTAC------ACACCAAATTGTGCATCCACACCACCACCACCAGCAGCAG 112
consensus_1782#1      CGAGGAAGAGTTGCTGGAGGAGGAAACGCTGCTCGAGCCGGCGGAAACGATCGTCGGAGA 117
                       * ** * **** *      *    *   **  *   *   *    ** * *  * *   

consensus_1782#0      TCGCAGCACCACCAAACGTACACCATCAGTCTGGGCAGCAGCAGCGCTGGTAACGGCACC 172
consensus_1782#1      TCACGTGACGGTCGAGACGTCGTCGCCGGT--GCCAAGTCCCGGCGC-GGAAACGACACT 174
                      ** *   **   * *     *  *  * **  *   **   * **** ** **** *** 

consensus_1782#0      AACCAC-TACCAAACGGTTACCACGGTAACGTCGAACGGTGCTCCGGTCGTCAACACCAC 231
consensus_1782#1      GTCCGCCTGCCCGCTCGGTGGCGCTGGTATGACCGAGGGTCCCGCCGCCAGCAAGGCAAC 234
                        ** * * **     * *  * * *  * * *  * *** *  * * *  ***  * **

consensus_1782#0      CAGCGGAAGCAGCA----GCAG-CAGCAATATGGC---GTCCGACCGCAGTGGAACGGCC 283
consensus_1782#1      CACCGGCACCAGCATGGTGCTGTCCGCGATCCCCCTGGACCAGTCCATCATGCATCAGCA 294
                      ** *** * *****    ** * * ** **    *     * * **    ** * * ** 

consensus_1782#0      GGT---GCACTCGCACTAGTGACCGGAGGGGCCGCCAC-CACCGTGGTCAATGCAGCCGT 339
consensus_1782#1      AATTCTGCACCTGCACCAGCAGCAGCAGCAGCAGCAACACAGTGTGAACCATACGATCAA 354
                        *   ****  **** **   * * **  ** ** ** **  ***  * ** *   *  

consensus_1782#0      GCCATCGTCACCGTCCTCGTCCTCATCCTCCTCCTCCTCCCCGGCATCGATCGGTGCTCC 399
consensus_1782#1      --CAACAATAATACGAGCTTCAAAAATCACAACAGTAGCCACG-CAGGGAAAAACATCCT 411
                        ** *   *       * **   *  * *  *     ** ** **  **        * 

consensus_1782#0      TACCAACAGCAGCGCCGGTGGTGGTATGCTGGTGGTGACGGATCGTAACGGAACCGCCAC 459
consensus_1782#1      GCTCGGCAACAACAACAACAGCGGCAGTGGCACAGTTACACACCA-AATTGTGCATCCAC 470
                         *  ** ** *  *    * ** *        ** **  * *  **  *  *  ****

consensus_1782#0      CACGACGACCACGGGCAAGCTGGTGCTGCTGCATCAGGGGCGCGCGGGCGAAGATTATAT 519
consensus_1782#1      -ACCACCACCACCAGCA-GCAGTCGCAGCACCACCAAACGTACACCATC--AGTCTGGGC 526
                       ** ** *****  *** ** *  ** **  ** **   *  * *   *  **  *    

consensus_1782#0      AACAACGACGGGCGAAACG--ATCAACGGTGGCAACATCGTGCTGCTGGCAACGGAGCAG 577
consensus_1782#1      AGCAGCAGCGCTGGTAACGGCACCAACCACTACCAAACGGTTACCACGGTAACGTCGAAC 586
                      * ** *  **   * ****  * ****     * * *  **      ** ****  * * 

consensus_1782#0      ATGGACATGGCCGAGCACGACATCATTAACAACAACGTTATCATCAGCACCGCGGGTGGC 637
consensus_1782#1      GGTGCTCCGGTCGTCAACACCACCACCGGAAGCAGCAGCAGCAGCAGCAATATGG----- 641
                         *    ** **   **  ** **     * ** *   * ** *****    **     

consensus_1782#0      ACGACGCGCACCGTCGCGCTGCCCGCTCATCCCGCCCA 675
consensus_1782#1      --------------------------------------