These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1783#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CCGCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTATCCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGGACAACAGAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTGTTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGATAATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTTTTCAACCCCCGGTAAAAAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAATTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGGAAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTAAATTGTAGCTAA] [+] EMBL BM605160 [CCGCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTATCCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGGACAACAGAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTGTTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGATAATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTTTTCAACCCCCGGTAAAAAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAATTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGGAAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTAAATTGTAGCTAA] consensusID : consensus_1783#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACACAAACACACACGAACACACTGCTAGTGATTACTGAATACTATTAACGATTCCGATGCCTACCTCTGACGGGAGGAGGGAAGCACACCACCACGTGGAACTGAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGATTTTTCCCCCCGTTTTGGACCCCTTATACTCTACTGATAGCTCCCGAGAGCCAACTCTCTCCCCCCATCTAGGTTGTTTGTTCAACATTGCTCAGCTCGATGATGACAGCTCGTTGATTGTTTAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAATTGACTTTCGTGTGAGACAAGC] [+] EMBL BX615353 [AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTACTATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAGAAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTTACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACACACACACAAACACACACGAACACACTGCTAGTGATTACTGAATACTATTAACGATTCCGATGCCTACCTCTGACGGGAGGAGGGAAGCACACCACCACGTGGAACTGAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGATTTTTCCCCCCGTTTTGGACCCCTTATACTCTACTGATAGCTCCCGAGAGCCAACTCTCTCCCCCCATCTAGGTTGTTTGTTCAACATTGCTCAGCTCGATGATGACAGCTCGTTGATTGTTTAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAATTGACTTTCGTGTGAGACAAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1783#0 -------------------CCGCCTACTACTACTAATACTACAGCTACTACTACACCTAC 41 consensus_1783#1 AGCGACTACTACTACTACTACTCCTACTACTACTAATACTACAGCTACTACTACACCTAC 60 * ************************************** consensus_1783#0 TATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAG 101 consensus_1783#1 TATTAAGCAATCTACACAAACACGCACACAGACACAACACAACAACAGAGAGAACAACAG 120 ************************************************************ consensus_1783#0 AAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTT 161 consensus_1783#1 AAGTAAACCCAACTAATCCTACCATCTAAGAACTTCTCTACCAAGCTACTATAAGTATTT 180 ************************************************************ consensus_1783#0 ACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACAC 221 consensus_1783#1 ACTGAAGAAAAACAAACAAACAAACTCTATCCAACATAAACGTCAAACAAAGACAAACAC 240 ************************************************************ consensus_1783#0 ACACATACACTGATACAATCAAGCAAACGTACATCTCAATTATGACCGTAATATTACTAT 281 consensus_1783#1 ACACACAAAC--ACACA------CGAACACAC-TGCTAGTGATTACTG-AATACTATTAA 290 ***** * ** * *** * *** ** * * * ** ** * **** ** ** consensus_1783#0 CCTCTTTTACTGGCAGACCAATAAACACTAACACACACAAACATATAAACAGG-ACAACA 340 consensus_1783#1 CGATTCCGAT--GCCTACCTCTG---ACGGGAGGAGGGAAGCACACCACCACGTGGAACT 345 * * * ** *** * ** * ** ** * * ** * *** consensus_1783#0 GAACTAATAAACTGAGCAACAATACAGGGTTTTCCAAGTTACTTTCGAATGTAAACATTG 400 consensus_1783#1 GAACTACTGTGATTTCCTTTTGTTTTCTGCTTAACAAAAACAAAAACAAAACAAAAACGA 405 ****** * * * * * ** *** ** *** * consensus_1783#0 TTTTCTTTCGCGAACAAGAAGTTTTTCCACATCACTCTGTTATTTCGTTTCCTTCACGAT 460 consensus_1783#1 TTTTTCCCCCCGTTTTGGA-----CCCCTTAT-ACTCTACTGAT--AGCTCCCGAGAGCC 457 **** * ** ** ** ** ***** * * *** * consensus_1783#0 AATTTTTAATTTCCTCAGAGTGATTTTTAACACTTCAATGTT-TTCAACCCC-CGGTAAA 518 consensus_1783#1 AACTCTC--TCCCCCCATCTAGGTTGTTTG---TTCAACATTGCTCAGCTCGATGATGAC 512 ** * * * ** ** * ** ** ***** ** *** * * * * * consensus_1783#0 AAAAAAACAATTGCAACAGAATCGTTGAAGTGTTGAAAACCATACTGAGGAAATTAAAAA 578 consensus_1783#1 AGCTCGTTGATTGTT-TAAAACCACTTCGTTGTTGAGTTCGTTATTTAGAAAAATTGAAT 571 * **** * ** * * ****** * ** * ** *** * ** consensus_1783#0 TTATTGGTGATGGAAGTGAAATATCAGAGTGCTGTAGAATAACATTGTTGCACACGGTGG 638 consensus_1783#1 TGACTTTCG-TGTGAGACAAGC-------------------------------------- 592 * * * * ** ** ** consensus_1783#0 AAAAACAGTGTGTACATTTCGAAAGTGTCTTGGGAAACCCCTGTAAAACGCCATAGTTTA 698 consensus_1783#1 ------------------------------------------------------------ consensus_1783#0 AATTGTAGCTAA 710 consensus_1783#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||