cluster # 1793

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Anopheles gambiae
cluster # 1793 cluster # 1793 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1793#0 length = 679 sequences # 1

consensus_1793#1 length = 480 sequences # 1

consensusID : consensus_1793#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 679
fasta sequence

                              [CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTATGCTTTTAACAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTATTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTTGATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAATAAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCTATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCATGGTCATGTGTCCAATAAACTGTGTCATAACTT]

[+] EMBL BX622523             [CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTATGCTTTTAACAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTATTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTTGATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAATAAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCTATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCATGGTCATGTGTCCAATAAACTGTGTCATAACTT]




>consensus_1793#0
CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTATGCTTTT
AACAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAAT
CGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAA
TGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGC
CATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCA
TCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTAC
ACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTATTAAGACCCGTCG
TTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTTGATATTTTACTTA
TACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAATAAGCTATATTCAA
TCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCTATAAAATATAAGA
GAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCATGGTCATGTGTCCA
ATAAACTGTGTCATAACTT

consensusID : consensus_1793#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 480
fasta sequence

                              [TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACGAGAAAATTATATCATAATTGGCTCATTAAGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAAAAAANAAAAACAGGCATGTTTNACCTC]

[-] EMBL AL694148             [TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACGAGAAAATTATATCATAATTGGCTCATTAAGTCTTATCCTGCCACTTGGTTGCTACCTGCCCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACAAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATTCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATTCCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAAGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGCGATCAAAACTACACCAAACCAGCTAAAAAAAAAAAAANAAAAACAGGCATGTTTNACCTC]




>consensus_1793#1
TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACG
AGAAAATTATATCATAATTGGCTCATTAAGTCTTATCCTGCCACTTGGTTGCTACCTGCC
CTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTACA
AAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACATT
CTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATTC
CTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACAA
GTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTGC
GATCAAAACTACACCAAACCAGCTAAAAAAAAAAAAANAAAAACAGGCATGTTTNACCTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1793#0      ------------------------------------------------------------
consensus_1793#1      TNTGGGCCAATCTTGTCAACGCACGGCCAATGCTCAAGCGACATATGAAGCTGAAGCACG 60
                                                                                  

consensus_1793#0      ------------CATAATTGGCTCATTAAGGTCTTATCCTGCCACTTGGTTGCTACCTGC 48
consensus_1793#1      AGAAAATTATATCATAATTGGCTCATTAAG-TCTTATCCTGCCACTTGGTTGCTACCTGC 119
                                  ****************** *****************************

consensus_1793#0      CCTTATGCTTTTAAC-AAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTAC 107
consensus_1793#1      CCTTANGCTTTTAACCAAGGGGTCATCACCGTGTATTATCGATTGTAACAGTGAGTTTAC 179
                      ***** ********* ********************************************

consensus_1793#0      AAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACAT 167
consensus_1793#1      AAAAAATTGAAATCGTCTCCGATGAAAAGCTGCATAAGTGCCCGGAATGTCGACGTACAT 239
                      ************************************************************

consensus_1793#0      TCTGCTCCATGAATGCTATGAAGCGACACCGGCAGGCCAAACATTTCGCTTTGCAGGATT 227
consensus_1793#1      TCTGCTCCATGAATGCTATGAAGCGACACCGGCAGCCCAAACATTTCGCTTTGCAGGATT 299
                      *********************************** ************************

consensus_1793#0      CCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACA 287
consensus_1793#1      CCTACGTATGTGCCATGTGTGAGGCTCGGTTCAAAACGAAATGGTCACTATCGACACACA 359
                      ************************************************************

consensus_1793#0      AGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTG 347
consensus_1793#1      AGTCAAAATACCATCGAGGTCAAACTACTACAGGGACAATCGAAGCAGAAAGGCATGTTG 419
                      ************************************************************

consensus_1793#0      CGATCAAAACTACACCAAACCAGCTAAAAAAAAATGCAAGTGGGACAATTGTCACCCGTA 407
consensus_1793#1      CGATCAAAACTACACCAAACCAGCTAAAAAAAAAAA-AANAAAAACAGGCATGTTTNACC 478
                      **********************************   **     ***    *        

consensus_1793#0      TTAAGACCCGTCGTTTATCATCGGAAGACTCGTAGATACATTATCAACAGGTTTTTTCTT 467
consensus_1793#1      TC---------------------------------------------------------- 480
                      *                                                           

consensus_1793#0      GATATTTTACTTATACAGGATAAGTTATGAAAAAAGAAATGTAGTTTGTAAGTTAATAAT 527
consensus_1793#1      ------------------------------------------------------------
                                                                                  

consensus_1793#0      AAGCTATATTCAATCGACCAGACCTGTTGTATATTTTGAACGAAACTTGAAATCGATGCT 587
consensus_1793#1      ------------------------------------------------------------
                                                                                  

consensus_1793#0      ATAAAATATAAGAGAGAAAATATGCAACCGTATTTGACATTGGAGTAGAGATACGTCCAT 647
consensus_1793#1      ------------------------------------------------------------
                                                                                  

consensus_1793#0      GGTCATGTGTCCAATAAACTGTGTCATAACTT 679
consensus_1793#1      --------------------------------