cluster # 1807

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Anopheles gambiae
cluster # 1807 cluster # 1807 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1807#0 length = 626 sequences # 1

consensus_1807#1 length = 112 sequences # 1

consensusID : consensus_1807#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 626
fasta sequence

                              [CGACCCACGCGTCCGCGGACGCGTGGGATGCAGCGACCTGCCCTTGAACGGTATCACAAGTTCATCGACATCGCCTCGGCTCGCCCGATGGGCCTGTGCGATGTGCACGTATGCAGTTCCGCCCCGGAGCCAAGTGACACTAGTGCGTGTTGTGTAACGAATCTCTAATACGAGCGTGTGCTAGTGTGCTGACGAAAACATGAGCCCGGCCGGAGCCGACCGGCCGAGATGCGCATCTTGCCGTCACTCTCCGGAGCGACCACAGGGAGAGCGACTAGGTCTGACGTGTAACGGGTGCCTTGCCGGGTGCATATATCACCCGCCGGCACCACACAGGTGCAGTGCATAATTTACGTTATTGCACTGCGCTGCGTATTGCATTGCCGTCATTGATCGGGTTCGTCGCCGCGCGTCAGCTGTGTATCGATTTGCTGGCACTGATTTGATTGAGATTTTTAAACCCTGCTCGAACGCAAAACTGCAAAGAAGTATATATTACAAAAAGAGAGAGATTGAGAGAGACATACATTGTCCGCACGCTCCTTCCCCGGACAGATCGGCTCCCACCTCTGTCAGGCGTGGCGTTATGTAAATTTACGCTTGTTTAGTGCACTCGGTGCAGTGCG]

[+] EMBL BM645658             [CGACCCACGCGTCCGCGGACGCGTGGGATGCAGCGACCTGCCCTTGAACGGTATCACAAGTTCATCGACATCGCCTCGGCTCGCCCGATGGGCCTGTGCGATGTGCACGTATGCAGTTCCGCCCCGGAGCCAAGTGACACTAGTGCGTGTTGTGTAACGAATCTCTAATACGAGCGTGTGCTAGTGTGCTGACGAAAACATGAGCCCGGCCGGAGCCGACCGGCCGAGATGCGCATCTTGCCGTCACTCTCCGGAGCGACCACAGGGAGAGCGACTAGGTCTGACGTGTAACGGGTGCCTTGCCGGGTGCATATATCACCCGCCGGCACCACACAGGTGCAGTGCATAATTTACGTTATTGCACTGCGCTGCGTATTGCATTGCCGTCATTGATCGGGTTCGTCGCCGCGCGTCAGCTGTGTATCGATTTGCTGGCACTGATTTGATTGAGATTTTTAAACCCTGCTCGAACGCAAAACTGCAAAGAAGTATATATTACAAAAAGAGAGAGATTGAGAGAGACATACATTGTCCGCACGCTCCTTCCCCGGACAGATCGGCTCCCACCTCTGTCAGGCGTGGCGTTATGTAAATTTACGCTTGTTTAGTGCACTCGGTGCAGTGCG]




>consensus_1807#0
CGACCCACGCGTCCGCGGACGCGTGGGATGCAGCGACCTGCCCTTGAACGGTATCACAAG
TTCATCGACATCGCCTCGGCTCGCCCGATGGGCCTGTGCGATGTGCACGTATGCAGTTCC
GCCCCGGAGCCAAGTGACACTAGTGCGTGTTGTGTAACGAATCTCTAATACGAGCGTGTG
CTAGTGTGCTGACGAAAACATGAGCCCGGCCGGAGCCGACCGGCCGAGATGCGCATCTTG
CCGTCACTCTCCGGAGCGACCACAGGGAGAGCGACTAGGTCTGACGTGTAACGGGTGCCT
TGCCGGGTGCATATATCACCCGCCGGCACCACACAGGTGCAGTGCATAATTTACGTTATT
GCACTGCGCTGCGTATTGCATTGCCGTCATTGATCGGGTTCGTCGCCGCGCGTCAGCTGT
GTATCGATTTGCTGGCACTGATTTGATTGAGATTTTTAAACCCTGCTCGAACGCAAAACT
GCAAAGAAGTATATATTACAAAAAGAGAGAGATTGAGAGAGACATACATTGTCCGCACGC
TCCTTCCCCGGACAGATCGGCTCCCACCTCTGTCAGGCGTGGCGTTATGTAAATTTACGC
TTGTTTAGTGCACTCGGTGCAGTGCG

consensusID : consensus_1807#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 112
fasta sequence

                              [CCCGTCATGACGGTCGTCGTCCGCGTCACTGTGTATCGATTTGCTGGCACTGATTGATGAGATTTTTAAAACCCCTGGCTCGAACGCAAAACTGCAAAGAAGTATATATTAC]

[+] EMBL AL694199             [CCCGTCATGACGGTCGTCGTCCGCGTCACTGTGTATCGATTTGCTGGCACTGATTGATGAGATTTTTAAAACCCCTGGCTCGAACGCAAAACTGCAAAGAAGTATATATTAC]




>consensus_1807#1
CCCGTCATGACGGTCGTCGTCCGCGTCACTGTGTATCGATTTGCTGGCACTGATTGATGA
GATTTTTAAAACCCCTGGCTCGAACGCAAAACTGCAAAGAAGTATATATTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1807#0      CGACCCACGCGTCCGCGGACGCGTGGGATGCAGCGACCTGCCCTTGAACGGTATCACAAG 60
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      TTCATCGACATCGCCTCGGCTCGCCCGATGGGCCTGTGCGATGTGCACGTATGCAGTTCC 120
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      GCCCCGGAGCCAAGTGACACTAGTGCGTGTTGTGTAACGAATCTCTAATACGAGCGTGTG 180
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      CTAGTGTGCTGACGAAAACATGAGCCCGGCCGGAGCCGACCGGCCGAGATGCGCATCTTG 240
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      CCGTCACTCTCCGGAGCGACCACAGGGAGAGCGACTAGGTCTGACGTGTAACGGGTGCCT 300
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      TGCCGGGTGCATATATCACCCGCCGGCACCACACAGGTGCAGTGCATAATTTACGTTATT 360
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      GCACTGCGCTGCGTATTGCATTGCCGTCATTGATCGGGTTCGTCGCCGCGCGTCAGCTGT 420
consensus_1807#1      --------------------------CCCGTCATGACGGTCGTCGTC-CGCGTCA-CTGT 32
                                                 *  * **   * ****** * ******* ****

consensus_1807#0      GTATCGATTTGCTGGCACTGATTTGATTGAGATTTTTAAACCCT---GCTCGAACGCAAA 477
consensus_1807#1      GTATCGATTTGCTGGCACTGATTGA--TGAGATTTTTAAAACCCCTGGCTCGAACGCAAA 90
                      ***********************    ************* **    *************

consensus_1807#0      ACTGCAAAGAAGTATATATTACAAAAAGAGAGAGATTGAGAGAGACATACATTGTCCGCA 537
consensus_1807#1      ACTGCAAAGAAGTATATATTAC-------------------------------------- 112
                      **********************                                      

consensus_1807#0      CGCTCCTTCCCCGGACAGATCGGCTCCCACCTCTGTCAGGCGTGGCGTTATGTAAATTTA 597
consensus_1807#1      ------------------------------------------------------------
                                                                                  

consensus_1807#0      CGCTTGTTTAGTGCACTCGGTGCAGTGCG 626
consensus_1807#1      -----------------------------