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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1818#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGAGTGAAATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACACAACAGGAGATATTT]
[+] EMBL BX621560 [CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGAGTGAAATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACACAACAGGAGATATTT]
consensusID : consensus_1818#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CCGCGAAAAGATCAGCAATGCTGCCGAGCGCAAAATTGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACAC]
[+] EMBL BM582391 [CCGCGAAAAGATCAGCAATGCTGCCGAGCGCAAAATTGGTTGCGCATCTTGCCTTGGCGAGACGATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGCCAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATCGGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAACCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGTTGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCCGGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGTACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAATCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCACAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGAAAAAGGCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1818#0 CAGCAATGCTGCCGAGCGCAAAATTGGTACGAAAAAATACACTTCTAGGCCTAATATTGA 60
consensus_1818#1 --------------------------------------------------------CCGC 4
*
consensus_1818#0 GTGAA-ATGAAACATCCTAACGTTGTCGTTTTTAGGTTGCGCATCTTGCCTTGGCGAGAC 119
consensus_1818#1 GAAAAGATCAGCAATGCTGCCGAGCGCAAAATT-GGTTGCGCATCTTGCCTTGGCGAGAC 63
* ** ** * ** ** ** * ** **************************
consensus_1818#0 GATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGC 179
consensus_1818#1 GATGCGTGCACACTACAGCAAGCGTGGCAAAGTCACAGTCAGGTCGGTACAAGATATCGC 123
************************************************************
consensus_1818#0 CAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATC 239
consensus_1818#1 CAAAAGGGGACCGTCCTCTTACGTATGAAATGGCAAATCCTCCGCATCAGATAGCGCATC 183
************************************************************
consensus_1818#0 GGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAA 299
consensus_1818#1 GGAAAGCATGGAACTCGTGGAACACTTCCAATCTAGAAGGTGAACTGCGCCCATCGCAAA 243
************************************************************
consensus_1818#0 CCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGT 359
consensus_1818#1 CCATGCTGGAGGACGATTTCATTCGCCGGTTCATGGCGGGCACCTGGCACGGTCTGGTGT 303
************************************************************
consensus_1818#0 TGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCC 419
consensus_1818#1 TGTCCGAAGTAATCATCAAGCGGCAGCACAATCATGTGCGTATAGCAGCGATCATTAGCC 363
************************************************************
consensus_1818#0 GGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGT 479
consensus_1818#1 GGTCAATTCCGGCAAGGAAAATGTACTTCCTGATTGGGTACTGCGAGGAGCTGCTCGCGT 423
************************************************************
consensus_1818#0 ACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAA 539
consensus_1818#1 ACTGGTTGCAGTGTCCGGTTACGCTCGAGCTGCAGACCACCGATGATAGGAAGGATGTAA 483
************************************************************
consensus_1818#0 TCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCA 599
consensus_1818#1 TCTTTAAGTACATCTAAATGGCCCAAATGCATTTTTGCGCACTGTTAGTATAATAGGCCA 543
************************************************************
consensus_1818#0 CAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGA 659
consensus_1818#1 CAACACACGGATGCATGATTGTAGCATGTAAATAAGATAAAAGAAGACTAAATACTACGA 603
************************************************************
consensus_1818#0 AAAAGGCACACAACAGGAGATATTT 684
consensus_1818#1 AAAAGGCACAC-------------- 614
***********
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||