cluster # 1820

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Anopheles gambiae
cluster # 1820 cluster # 1820 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1820#0 length = 559 sequences # 1

consensus_1820#1 length = 443 sequences # 1

consensusID : consensus_1820#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 559
fasta sequence

                              [AGAATCGCCCGAGGTTTAAGAGTGTGTGTTTCTCCAAGCTCCGCGTAAATATTATTGCTTTCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACATCTACACGCGGGACGCACGGGCAGTCGCGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGCGATGGACCATGCACAGGCCCTCCGCACCCAGATCCAGAAAGAGATCGAAGAAAAGGCCAAGGTCTGCTCCAACACACAGTACGAGTGTACGCTGCCCCGGGTCGACTCGTACGCCTACTGCTTCCGGCACATCCTGCAGGACCCGGACGCACCGTACAAGCAGTGCGAGTACGAGTTCGCGAACGGGCGCCGCTGCCTGGAGCCGTCGCCAAAGTACGACGCCAAGCGGGACTACGGCTCAAACTACTGCTTCGAGCACAGCCGCCAGACGCAGCTGATCAAGACCAAGTCCACGATCGGGAAGCTGGTGCCGGTGGAGACGACCGAAACGCTGCTGAACGGTCTAACACACCACGTGAAGGTGGACAAGGTGAAGCAG]

[+] EMBL AL694300             [AGAATCGCCCGAGGTTTAAGAGTGTGTGTTTCTCCAAGCTCCGCGTAAATATTATTGCTTTCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACATCTACACGCGGGACGCACGGGCAGTCGCGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGCGATGGACCATGCACAGGCCCTCCGCACCCAGATCCAGAAAGAGATCGAAGAAAAGGCCAAGGTCTGCTCCAACACACAGTACGAGTGTACGCTGCCCCGGGTCGACTCGTACGCCTACTGCTTCCGGCACATCCTGCAGGACCCGGACGCACCGTACAAGCAGTGCGAGTACGAGTTCGCGAACGGGCGCCGCTGCCTGGAGCCGTCGCCAAAGTACGACGCCAAGCGGGACTACGGCTCAAACTACTGCTTCGAGCACAGCCGCCAGACGCAGCTGATCAAGACCAAGTCCACGATCGGGAAGCTGGTGCCGGTGGAGACGACCGAAACGCTGCTGAACGGTCTAACACACCACGTGAAGGTGGACAAGGTGAAGCAG]




>consensus_1820#0
AGAATCGCCCGAGGTTTAAGAGTGTGTGTTTCTCCAAGCTCCGCGTAAATATTATTGCTT
TCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACA
TCTACACGCGGGACGCACGGGCAGTCGCGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGC
GATGGACCATGCACAGGCCCTCCGCACCCAGATCCAGAAAGAGATCGAAGAAAAGGCCAA
GGTCTGCTCCAACACACAGTACGAGTGTACGCTGCCCCGGGTCGACTCGTACGCCTACTG
CTTCCGGCACATCCTGCAGGACCCGGACGCACCGTACAAGCAGTGCGAGTACGAGTTCGC
GAACGGGCGCCGCTGCCTGGAGCCGTCGCCAAAGTACGACGCCAAGCGGGACTACGGCTC
AAACTACTGCTTCGAGCACAGCCGCCAGACGCAGCTGATCAAGACCAAGTCCACGATCGG
GAAGCTGGTGCCGGTGGAGACGACCGAAACGCTGCTGAACGGTCTAACACACCACGTGAA
GGTGGACAAGGTGAAGCAG

consensusID : consensus_1820#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 443
fasta sequence

                              [TTTCTCCAAGCTCCGCGTAAATATTATTGCTTTCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACATCTACACGCGGGACGCACGGGCAGTCGCGGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGCGATGGACCATGCACAGGCCCTCCGGAACCCAGGAATCCAGAAAGAGATCGAGCGAAGAGAACGCGNAACGAGTTCANGCTCGCGAAACACAAGAGCAGCCAAGGGGTGGCGCGATGGCCGCGCGAGCTCCAGCTCAGGTAGAGTGNATACATGCATCAGCGGCCTCCGTACCCGGCATCGAGACACGANACTGCCAACAAAANGACANAGGTCGGNGACCAACAAACANCACGAAAANGGAGCGCGTGCCCCGGGCTCTGAATGCGCGCGCGCTAAAGGTTACCGAACGC]

[+] EMBL AL694249             [TTTCTCCAAGCTCCGCGTAAATATTATTGCTTTCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACATCTACACGCGGGACGCACGGGCAGTCGCGGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGCGATGGACCATGCACAGGCCCTCCGGAACCCAGGAATCCAGAAAGAGATCGAGCGAAGAGAACGCGNAACGAGTTCANGCTCGCGAAACACAAGAGCAGCCAAGGGGTGGCGCGATGGCCGCGCGAGCTCCAGCTCAGGTAGAGTGNATACATGCATCAGCGGCCTCCGTACCCGGCATCGAGACACGANACTGCCAACAAAANGACANAGGTCGGNGACCAACAAACANCACGAAAANGGAGCGCGTGCCCCGGGCTCTGAATGCGCGCGCGCTAAAGGTTACCGAACGC]




>consensus_1820#1
TTTCTCCAAGCTCCGCGTAAATATTATTGCTTTCCAACAACAGTTCTTTCATTGTACGCG
GGAATTGTATTTTTTGCGATGGGACCGACACATCTACACGCGGGACGCACGGGCAGTCGC
GGGCGGGCCGAGCCCGGGCACCTCCAGCCAGGCGATGGACCATGCACAGGCCCTCCGGAA
CCCAGGAATCCAGAAAGAGATCGAGCGAAGAGAACGCGNAACGAGTTCANGCTCGCGAAA
CACAAGAGCAGCCAAGGGGTGGCGCGATGGCCGCGCGAGCTCCAGCTCAGGTAGAGTGNA
TACATGCATCAGCGGCCTCCGTACCCGGCATCGAGACACGANACTGCCAACAAAANGACA
NAGGTCGGNGACCAACAAACANCACGAAAANGGAGCGCGTGCCCCGGGCTCTGAATGCGC
GCGCGCTAAAGGTTACCGAACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1820#0      AGAATCGCCCGAGGTTTAAGAGTGTGTGTTTCTCCAAGCTCCGCGTAAATATTATTGCTT 60
consensus_1820#1      ----------------------------TTTCTCCAAGCTCCGCGTAAATATTATTGCTT 32
                                                  ********************************

consensus_1820#0      TCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACA 120
consensus_1820#1      TCCAACAACAGTTCTTTCATTGTACGCGGGAATTGTATTTTTTGCGATGGGACCGACACA 92
                      ************************************************************

consensus_1820#0      TCTACACGCGGGACGCACGGGCAGTCGCGG-CGGGCCGAGCCCGGGCACCTCCAGCCAGG 179
consensus_1820#1      TCTACACGCGGGACGCACGGGCAGTCGCGGGCGGGCCGAGCCCGGGCACCTCCAGCCAGG 152
                      ****************************** *****************************

consensus_1820#0      CGATGGACCATGCACAGGCCCTCCGCA-CCCAG--ATCCAGAAAGAGATCGAA-GAAAAG 235
consensus_1820#1      CGATGGACCATGCACAGGCCCTCCGGAACCCAGGAATCCAGAAAGAGATCGAGCGAAGAG 212
                      ************************* * *****  *****************  *** **

consensus_1820#0      GCCAAGGTCTGCTCCAACACACAGTACGAGTGTACGCTGCCCCGGGTCGACTCGTACGCC 295
consensus_1820#1      AACGCGNAACGAGTTCANGCTCGCGAAACACAAGAGCAGCCAAGGGGTGGCGCGATGGCC 272
                        *  *    *     *  * *   *         ** ***  ***  * * **   ***

consensus_1820#0      -TACTGCTTCCGGCACATCCTGCAGGACCCGGACGCACCGTACAAGCAGTGCGAGTACGA 354
consensus_1820#1      GCGCGAGCTCCAGCTCA---GGTAGAGT--GNATACAT-GCATCAGCGGCCTCCGTACCC 326
                         *    *** ** **    * **     * *  **  * *  *** *     ****  

consensus_1820#0      GTTCGCGAACGGGCGCCGCTGCCTGGAGCCGTCGCCAAAGTACGACGCCAAGCGGGACTA 414
consensus_1820#1      GGCATCGAG-ACACGANACTGCCAACAAA-ANGACANAGGTCGGNGACCAACAAACANCA 384
                      *    ***     **   *****   *       *  * **  *   ****     *  *

consensus_1820#0      CGGC--TCAAACTACTGCTTCGAGCACAGCCGCCAGACGCAGCTGATCAAGACCAAGTCC 472
consensus_1820#1      CGAAAANGGAGCGCGTGCCCCGGGCTCTGAATGCGCGCGC-GCTAAAGGTTACCGAACGC 443
                      **       * *   ***  ** ** * *    *   *** *** *     *** *   *

consensus_1820#0      ACGATCGGGAAGCTGGTGCCGGTGGAGACGACCGAAACGCTGCTGAACGGTCTAACACAC 532
consensus_1820#1      ------------------------------------------------------------
                                                                                  

consensus_1820#0      CACGTGAAGGTGGACAAGGTGAAGCAG 559
consensus_1820#1      ---------------------------