These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 628 fasta sequence [CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTTCGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTCCAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTGAAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTAAATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTAC] [+] EMBL BM656172 [CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTTCGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTCCAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTGAAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTAAATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTAC] consensusID : consensus_1822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CCGCTTCCTCCGAACTCGTGCTTTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTCTAGATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTCGGCCCTGGCCGCACTTCCGCTGAAGGAGC] [+] EMBL BM604620 [CCGCTTCCTCCGAACTCGTGCTTTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTCTAGATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTGCAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAAGTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACCCACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTGGTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGCAGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGTCAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTCGGCCCTGGCCGCACTTCCGCTGAAGGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1822#0 CCGCCTCTTCCACAACCAAATCAGTTGGATTTTCTTGGCTGGGATTTTCTATTTCATTTT 60 consensus_1822#1 ------------------------------------------------------------ consensus_1822#0 CGGAATTCCCTATACAAACGGACACTTCACGTGGATAAATCCTCTGCTCCAACTTCGTTC 120 consensus_1822#1 ------------------------------------------------------------ consensus_1822#0 CAAGAATAGTGCATTTGCGACATGATTATCTACACCAACACCGGAAACCCTTTCGTGTTG 180 consensus_1822#1 -------------------------------------------CCGCTTCCTCCGAACTC 17 * * ** * consensus_1822#0 AAGCTGCTGATTTGTGCAAATTTGGCGAAAACCAACGTGGAGGTTAAGCATGTTACGCTA 240 consensus_1822#1 GTGCT-TTCATTCGACAATGGTTAACGGCACCTTCTTGTGCAATTTCTTACTCTACACTC 76 *** * *** * * ** ** * * * ** * *** ** consensus_1822#0 AATGATCCCGCCCTCGGTGATATGAAGCATCTCCCTATACTTCAGCTGAACAGTGGCGTG 300 consensus_1822#1 TA-GATTCCGCCCTGGGTGATATGAAGCATCTTCCCGTACTTCAGCTGAACAGTGGCGTG 135 * *** ******* ***************** ** *********************** consensus_1822#0 CAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAA 360 consensus_1822#1 CAGCTGTTTTCCACCGATGTGGCCGCCAAGTATCTCCTGCCGGGTGACGATGCGTCCAAA 195 ************************************************************ consensus_1822#0 GTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTTGCGCCCGCACTGACC 420 consensus_1822#1 GTGGTGCAGCGAGACGAGTGGCTCGAATGGTCCTCGAAACGGCTAGCGCCCGCACTGACC 255 ******************************************** *************** consensus_1822#0 CACAACATGGCCGTTGGTTCGCGGGCCGATCCGAACACAAAGCCCATCCTGAACACGCTG 480 consensus_1822#1 CACAACATGGCCGTTGGTTCGCGGGCCGATCCCAACACGAAGCCCATCCTGAACACGCTG 315 ******************************** ***** ********************* consensus_1822#0 GTAAAGATGCTGGACGATTGTCTAAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGC 540 consensus_1822#1 GTAAAGATGCTGGACGATTGTCTGAGCAATAGTACGTTCTTGACGGGCGATAAAATCAGC 375 *********************** ************************************ consensus_1822#0 AGCGCCGATGTGGCCGTATGGAGCTTGCTTGCGCCCGACGGCACACTGGAAGGGCGCGGT 600 consensus_1822#1 AGCGCCGATGTGGCCGTATGGAGCTTGCTTGCCCCCGACGGCACACTGAAAGGGCGCGGT 435 ******************************** *************** *********** consensus_1822#0 CAACATTGACAATGTGCTTCGCTGGTAC-------------------------------- 628 consensus_1822#1 CAACATTGACAATGTGCTTCGCTGGTACCGTCAGATTACGGCCCTGCCCGAGGTACAGTC 495 **************************** consensus_1822#0 ----------------------------- consensus_1822#1 GGCCCTGGCCGCACTTCCGCTGAAGGAGC 524 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||