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Anopheles gambiae
cluster # 1827 cluster # 1827       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1827#0 length = 711 sequences # 1  
consensus_1827#1 length = 572 sequences # 1  

consensusID : consensus_1827#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence
                              [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG]

[+] EMBL BM604569             [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG]


>consensus_1827#0 CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGG TTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGT GCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACC TGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGT CACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG



consensusID : consensus_1827#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence
                              [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA]

[+] EMBL BM615080             [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA]


>consensus_1827#1 CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGAC CATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTG GACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAG GGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTC AAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTG CGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGC ACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTC ACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCG TACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCAT CGGGACATCAAGGGCCACAACATACTGCTTGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1827#0      CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGG 60
consensus_1827#1      ------------------------------------------------------------
                                                                                  

consensus_1827#0      TTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGT 120
consensus_1827#1      ------------------------------------------------------------
                                                                                  

consensus_1827#0      GCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACC 180
consensus_1827#1      ----------------------------------------CCGCGGACGCGTGGGCTAGC 20
                                                               ** *  **     ** * *

consensus_1827#0      TGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGT 240
consensus_1827#1      -GCATAGCGTGG-ACGTTGAGCGGTTTTTGTGCTAATG--TGACCATTCGCTTGTTGGCT 76
                       * * *    *    *  ***  *      *** ***   * *  *   *** *     *

consensus_1827#0      CACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 300
consensus_1827#1      TTCTTCGCA---GGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 133
                        * *****   ************************************************

consensus_1827#0      TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 360
consensus_1827#1      TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 193
                      ************************************************************

consensus_1827#0      AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 420
consensus_1827#1      AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 253
                      ************************************************************

consensus_1827#0      GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 480
consensus_1827#1      GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 313
                      ************************************************************

consensus_1827#0      AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 540
consensus_1827#1      AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 373
                      ************************************************************

consensus_1827#0      ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 600
consensus_1827#1      ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 433
                      ************************************************************

consensus_1827#0      AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 660
consensus_1827#1      AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 493
                      ************************************************************

consensus_1827#0      AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG--------- 711
consensus_1827#1      AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGG 553
                      ***************************************************         

consensus_1827#0      -------------------
consensus_1827#1      GCCACAACATACTGCTTGA 572
                                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)