These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG] [+] EMBL BM604569 [CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGGTTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGTGCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACCTGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGTCACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG] consensusID : consensus_1827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA] [+] EMBL BM615080 [CCGCGGACGCGTGGGCTAGCGCATAGCGTGGACGTTGAGCGGTTTTTGTGCTAATGTGACCATTCGCTTGTTGGCTTTCTTCGCAGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGCTGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCGAGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGAGCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCAAGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGGATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTCAAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGGAGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGGGCCACAACATACTGCTTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1827#0 CCGCCCGTTGCCGTCCTGCGTGTTGCTGCTGATGCTGTTGCATATGGTGCGTTTTTGTGG 60 consensus_1827#1 ------------------------------------------------------------ consensus_1827#0 TTGGAGATAACACGCATATCGAAAGTGTTACCGGGTCCGTGCGCTACGCTGGTGGAGTGT 120 consensus_1827#1 ------------------------------------------------------------ consensus_1827#0 GCGTTTCCATGAGCGGCAATGGGACGAACGTACGCGGAAGGCGAGATCGTTCCAGCAACC 180 consensus_1827#1 ----------------------------------------CCGCGGACGCGTGGGCTAGC 20 ** * ** ** * * consensus_1827#0 TGTACAAGACGACGGGCGGAGGCGACCCGCTGCGAATAATTCAAAACAAGCTGGAACTGT 240 consensus_1827#1 -GCATAGCGTGG-ACGTTGAGCGGTTTTTGTGCTAATG--TGACCATTCGCTTGTTGGCT 76 * * * * * *** * *** *** * * * *** * * consensus_1827#0 CACCTCGCAACTGGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 300 consensus_1827#1 TTCTTCGCA---GGAATATGGCATACAATGGACTGTCGCAGCATGTGGACTTCAGCAGGC 133 * ***** ************************************************ consensus_1827#0 TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 360 consensus_1827#1 TGCCGAACCCGAGCGAGCGGTTCGAGCTGCTGGACCTGATCGGCGAGGGCACGTACGGCG 193 ************************************************************ consensus_1827#0 AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 420 consensus_1827#1 AGGTCTACAGCGCGAAGGACAAACACACCGGGCGCAAGTATGCGGTCAAGATATTGGAGA 253 ************************************************************ consensus_1827#0 GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 480 consensus_1827#1 GCATTGCCGATAATATCGAGGAGATCGAGGAGGAGTATCTGGTGCTGCGCGATCTCTCCA 313 ************************************************************ consensus_1827#0 AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 540 consensus_1827#1 AGCATCCCAACATTCCCGACTTTGCCGGGCTGTTCCTGAAGCGCGGCACCACCGTCGAGG 373 ************************************************************ consensus_1827#0 ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 600 consensus_1827#1 ATGACCAGCTGTGGTTCGTGCTGGAGCTATGCACCGGCGGCTCCGTCACGGATCTGGTTC 433 ************************************************************ consensus_1827#0 AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 660 consensus_1827#1 AAGGTCTGCGCAGCCGGGGTGCACGGCTGTCGAACAACCAGATCGCGTACATACTGCGGG 493 ************************************************************ consensus_1827#0 AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGG--------- 711 consensus_1827#1 AGACGGTGCAGGCGCTGGTCTTCCTGCACGAGAACCACTGCATGCATCGGGACATCAAGG 553 *************************************************** consensus_1827#0 ------------------- consensus_1827#1 GCCACAACATACTGCTTGA 572 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||