cluster # 1832

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Anopheles gambiae
cluster # 1832 cluster # 1832 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1832#0 length = 625 sequences # 1

consensus_1832#1 length = 534 sequences # 1

consensusID : consensus_1832#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 625
fasta sequence

                              [CCGTTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTTGTTTTTTTGTTTTATTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATGGCGTGTGTGTGCTGAATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTTATTTAGGAAAGGCTGGGAAGGCGTTTGTTTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGATTGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGGAGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACACACACACACATATACACGAAATGG]

[+] EMBL BM628466             [CCGTTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTTGTTTTTTTGTTTTATTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATGGCGTGTGTGTGCTGAATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTTATTTAGGAAAGGCTGGGAAGGCGTTTGTTTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGATTGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGGAGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACACACACACACATATACACGAAATGG]




>consensus_1832#0
CCGTTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATA
TATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTC
ACGTGCGTCACGTCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTC
TTGTTTTTTTGTTTTATTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATGGCGTGTGT
GTGCTGAATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGC
ATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATG
TTTATTTAGGAAAGGCTGGGAAGGCGTTTGTTTAATTGCTAAGCTTTAGATCATAGAGGG
GGATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGA
TTGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGG
GAGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAAC
ACACACACACATATACACGAAATGG

consensusID : consensus_1832#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTATTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTGAATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTATTTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG]

[+] EMBL AL933170             [AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGAGCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAAGCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGCGTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTATTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTGAATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTAGACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTATTTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGGGATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG]




>consensus_1832#1
AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGA
GCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAA
GCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGC
GTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTA
TTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTG
AATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTA
GACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTAT
TTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGG
GATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1832#0      ---------------------------------------CCGTTTTGTACTGTAACTAGA 21
consensus_1832#1      AATCGCCGAGGNCACTTTCTCGTGTATTATATTCTGTTTCTATTTTGTACTGTAACTAGA 60
                                                             *  ******************

consensus_1832#0      GCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAA 81
consensus_1832#1      GCGAACACAAAACTCCATTAGAACGTAAAGCTACAAATATATAAATATAAATATTATAAA 120
                      ************************************************************

consensus_1832#0      GCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGTCTGCGTGC 141
consensus_1832#1      GCAAAACAAATCTGTATGTATGTAATGCCTACCAGCGTCACGTGCGTCACGCCTGCGTGC 180
                      *************************************************** ********

consensus_1832#0      GTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCT-TGTTTTTTT----GTTTTA 196
consensus_1832#1      GTGTTTCGTTTTTTAAGCAAGGAAAAAGGGTTTTCATTCTCTGTNCTTTTATTAGTTTTA 240
                      **************************************** ***  ****    ******

consensus_1832#0      TTTAGTTTTCTTCCTACCCCCCCCTGCATTATTATG----------GCGTGTGTGTGCTG 246
consensus_1832#1      TTTAGTTTTCTTCCTACCCCCCGCATTATTACCGTGTGATGCGTGTGTGTGTGTGTGCTG 300
                      ********************** *   ****   **          * ************

consensus_1832#0      AATGTAAAAGAAGTTTGGGTGGAAACAGAAAGAAAGAAGGAAAGAATGTGGCGCATCCTA 306
consensus_1832#1      AATGTAAAACAAGTTTGAGTGGAAACAGAAAGAAAGGAAGTAAGAATGTGGCGCATCCTA 360
                      ********* ******* ****************** * * *******************

consensus_1832#0      GACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTT-TAT 365
consensus_1832#1      GACAAAACCCCCCACACACACGATGAAGAGGAGAAGCAAGAACAATGTAAAATGTTCTAT 420
                      ******************************************************** ***

consensus_1832#0      TTAGG---AAAGGCTGGGAAGGCGTTTGTT-TAATTGCTAAGCTTTAGATCATAGAGGGG 421
consensus_1832#1      TTCAGGCAANAGGCTGGGAAGGCGTTTGTTCTAATTGCTAAGCTTTAGATCATAGAGGGG 480
                      **  *   * ******************** *****************************

consensus_1832#0      GATGTGAGTGGGGAAATAGGGTGGTGTACCGACAGCGACGGTAAAAAATGGAAAAGTGAT 481
consensus_1832#1      GATGTGACGGGGGAAATAGGGTGGTGTACCGACAGCGACGGTNAAAACACATGG------ 534
                      *******  ********************************* ****             

consensus_1832#0      TGGAAAGTAAGGGAAAAGTGAACGCGTGAAAGTTGGTTTAGAAGAGTAAAAAAAAGTGGG 541
consensus_1832#1      ------------------------------------------------------------
                                                                                  

consensus_1832#0      AGGAAAAGTCAAACTAAACACAGTGTAGAGCAAAAGGATAAGCAAAGAAAGAAGAAAACA 601
consensus_1832#1      ------------------------------------------------------------
                                                                                  

consensus_1832#0      CACACACACATATACACGAAATGG 625
consensus_1832#1      ------------------------