These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1833#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 966 fasta sequence [ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACACTATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAATGAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAATAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNACAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATTTACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANAGTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCATACGNCCAGNTAATCGAGACGCCTAGGTCAGGTCTCTGACCTATAGATATAATGGAACNTTGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCGATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAACCACCAGACGGCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACACCCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAGCGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAAAAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACCCCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCANCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCCCNCGCCCN] [+] EMBL AL694309 [ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACACTATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAATGAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAATAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNACAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATTTACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANAGTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCATACGNCCAGNTAATCGAGACGCCTAGGTCAGGTCTCTGACCTATAGATATAATGGAACNTTGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCGATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAACCACCAGACGGCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACACCCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAGCGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAAAAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACCCCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCANCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCCCNCGCCCN] consensusID : consensus_1833#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [GCAGGTTAACCCAGAAATGATGCAAATTACACTAAGACACCCACTTCGGCGGCATCAAAACTCTGTGAGAGCTGTAATTGTATCAAAGACAAAGGTGTGTTTGACTGTACCAGTAAGCAAATTGGAGCAACATTATTCCCTCTAGAAGACTGGCAATCGCTGAACACAAATGGATTAGACGCGAAGTTGGTATTTCTTGTATCCACTGGCCTGAAAGAAATCACTCACTTTCCTTCCATGAATGTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAATGAANACTGGCTGTTTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATAATAGATTGCAAGCACGTGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCCATTATCAACANACTCACGTGTAGTTACAGTACTATGGCGCAAACGCATATACATTCACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGAGTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA] [+] EMBL AL695610 [GCAGGTTAACCCAGAAATGATGCAAATTACACTAAGACACCCACTTCGGCGGCATCAAAACTCTGTGAGAGCTGTAATTGTATCAAAGACAAAGGTGTGTTTGACTGTACCAGTAAGCAAATTGGAGCAACATTATTCCCTCTAGAAGACTGGCAATCGCTGAACACAAATGGATTAGACGCGAAGTTGGTATTTCTTGTATCCACTGGCCTGAAAGAAATCACTCACTTTCCTTCCATGAATGTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAATGAANACTGGCTGTTTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATAATAGATTGCAAGCACGTGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCCATTATCAACANACTCACGTGTAGTTACAGTACTATGGCGCAAACGCATATACATTCACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGAGTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1833#0 ATCCCCCGTTTATTTTTTTTTTTTTCTTGTATCCACTGGTTAGAAAGTAAATCACTACAC 60 consensus_1833#1 ------------------------------------------------------------ consensus_1833#0 TATNACCTATCCATGAATGTAACATAGGTTAGATATGAGCCACAATGAGATTGCGACAAT 120 consensus_1833#1 -----------------------GCAGGTTAACCCAGAA--ATGATGCAAATTACACTAA 35 ****** ** * *** * * ** * consensus_1833#0 GAAAACTAGGCTAGTANAAGCGAATATAACGCTGCTGCAGGTGCTAATCTATACGCATAA 180 consensus_1833#1 GACACCCACTTCGGCGGCATCAAA----ACTCTGTGAGAGCTG-TAATT-----GTATCA 85 ** * * * * * * ** ** *** ** ** **** * ** * consensus_1833#0 TAGATTAGAAAGTAGAATCACTATAATACCAGACGTANATNTACAGCTAGGACATTATNA 240 consensus_1833#1 AAGACAAAGGTGT-GTTTGACTGTACCAGTAAGC---AAATTGGAGC---AACATTATTC 138 *** * ** * * *** ** * * * * * *** ******* consensus_1833#0 CAACAAACGAATACATGCCATTATCAAAACTACGTAGTGTACGTCTAGGCGCANACGATT 300 consensus_1833#1 CCTCTA--GAAGACTGGCAATCGCTGAACACAAATGGATTAG----ACGCGAAGTTGGTA 192 * * * *** ** ** ** ** * * * ** * *** * * * consensus_1833#0 TACATTACACTGAACCCAGATTTATTGAAAATACTCACCATGCATATAGTAAGAACTANA 360 consensus_1833#1 TTTCTTGTATCCA--CTGGCCTGAAAGAAATCACTCACTTTCCTTCC-------ATGAAT 243 * ** * * * * * * **** ****** * * * * * consensus_1833#0 GTCTCGAAGTTGACATCCATCTACAAAGTAATAGANCCAACAGTACGGNAAATTAGNCAT 420 consensus_1833#1 GTAACATGGTTAGATTTGAGCCACAATGAGATTGCGACAAT------GAANACTGGCTGT 297 ** * *** * * * **** * ** * *** * * * * * * consensus_1833#0 ACGNCCAGNTAATCGAGACGCCTAG-GTCAGGTCTCTGACCTATAGATATAATGGAACNT 479 consensus_1833#1 TTTGCGAATTTAACGCTGCTGCAGGTGCTAGATCTATCGCATA-ATAGATTGCAAGCACG 356 * * * * ** * * * * ** *** * * ** * * ** consensus_1833#0 TGAAAGATATCCCAACAAGCTAATCTANCTACCAAACCACACGACGACGAGACATAACCG 539 consensus_1833#1 TGCANATCACTTAATCCAGACGTTTTCGCTGGCACATTATTCAACAAACGAATACATGCC 416 ** * * * * ** * * ** ** * * * ** * * * * * consensus_1833#0 ATACTCATATAAANTCCTAACCAGAAAAAAAACCNCAAAACCGGAATACAGATGGGAAAC 599 consensus_1833#1 ATTATCA-ACANACTCACGTGTAGTTACAGTACTATGGCGC----AAACGCATATACATT 471 ** *** * * * ** ** * * ** * * ** ** * consensus_1833#0 CACCAGACG-GCACACGAGCAGACGCNGACATCGCNNANTAGANCGCACNANCAACACAC 658 consensus_1833#1 CACTGAACCCAGATTTATTTGAACATACTCCCTGCATATCANGAAGCAACTAAGTCTCGA 531 *** ** * ** * ** * * *** * * consensus_1833#0 CCCTCANCCCGNCAAAAANACAACNAACNGGTAGCTCAATGCTACCCCCCACCGCGACAG 718 consensus_1833#1 GTTTGAATCCATTCAACAGTCAATAGACCAACAGTCGGAAATTGCCATCGGCCACGTA-- 589 * * ** ** * *** ** ** * * ** * ** ** consensus_1833#0 CGACCTNAACTCCANAAGAGGCGNAGCGGACCGGCGCGNGCNCACCGATGATCGAACTAA 778 consensus_1833#1 ------------------------------------------------------------ consensus_1833#0 AAGCNGNGCNCCAAGCCAGACAAAACANACCAANTCAGNCATNNACTANACCAACACACC 838 consensus_1833#1 ------------------------------------------------------------ consensus_1833#0 CCCGCGTGGCCACCCACCCCANANCCCACCGCCNACCTAACCAGCCAAACCCGGACACCA 898 consensus_1833#1 ------------------------------------------------------------ consensus_1833#0 NCGCCGCGACNGACACCACNCCCTCANCCCACACCACNACCACCACACCCNCACCCCCCC 958 consensus_1833#1 ------------------------------------------------------------ consensus_1833#0 CNCGCCCN 966 consensus_1833#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||