These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGCCCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCACCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTGGGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTATTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCAGCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTNCCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAATTGGCNNCGTA] [+] EMBL AL934485 [CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGCCCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCACCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTGGGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTATTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCAGCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTNCCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAATTGGCNNCGTA] consensusID : consensus_1839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [CGAGGTTTGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGGTGCACTGCGTACGCTGATGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACGTCCACTTTCCACCCGGCATGCTGCGACCGGGCGG] [+] EMBL AL694347 [CGAGGTTTGATGGCCAAATCCAAGTCTAGCGATGGCTATCAGCGCGGCGTTTACGGTGCACTGCGTACGCTGATGCACTTCATCGTGGCGGTACAGTTCTCGTACGGCATTTACTACGATTTTACGTACGTCCACTTTCCACCCGGCATGCTGCGACCGGGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1839#0 CTCGCCCCAGGTTAACTACTGCTGCTGCTGTACCCGCGCTCAGTGTTCTCGCGTCGTCGC 60 consensus_1839#1 ------------------------------------------------------------ consensus_1839#0 CCGTTTGAGGAAACGAGCAGCTAGAAGAAAAAACAAACAAGGGCAGAAGAAATTCTATCA 120 consensus_1839#1 ------------------------------------------------------------ consensus_1839#0 CCTCGAGAGCGATTGAATCATCCTCTAATACAGCGATGGCCAAATCCAAGTCTAGCGATG 180 consensus_1839#1 -------------------------CGAGGTT-TGATGGCCAAATCCAAGTCTAGCGATG 34 * ************************** consensus_1839#0 GCTATCAGCGCGGCGTTTACGTGTGCACTGCGTACGCTGATTGCACTTCATCGTGGCGGT 240 consensus_1839#1 GCTATCAGCGCGGCGTTTACG-GTGCACTGCGTACGCTGAT-GCACTTCATCGTGGCGGT 92 ********************* ******************* ****************** consensus_1839#0 ACAGTTCTCGTACGGCATTTACTACGATTTTACGTACTGTTCCCACTATATCCAACCCTG 300 consensus_1839#1 ACAGTTCTCGTACGGCATTTACTACGATTTTACGTACG---TCCACT---TTCCACCCGG 146 ************************************* ***** * * **** * consensus_1839#0 GGCATTGCATGCGGACCTNGTGNGCGGTAGTAGTTTNGGGTGTGCAAGTCTTGAAAGTTA 360 consensus_1839#1 CATGCTGC-----GACCGGGCGG------------------------------------- 164 *** **** * * consensus_1839#0 TTCTTCCAGCACGGTATGTGTGATTGTCGCATATNCTTACGAAAGGNCCAAGCTAGCTCA 420 consensus_1839#1 ------------------------------------------------------------ consensus_1839#0 GCTATTAACAAACGACAATTTATGGTTCTTGGCGTAGGCAAATTGGAATTTTTCCAAGTN 480 consensus_1839#1 ------------------------------------------------------------ consensus_1839#0 CCAGGGTTAACCCAAATTATGGAAGCTGGTCTGCACCACCGCGCTACATGCCCTGGGCAA 540 consensus_1839#1 ------------------------------------------------------------ consensus_1839#0 TTGGCNNCGTA 551 consensus_1839#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||