These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGACTTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGAGCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGATATTGCTAAAGGAATAGGAAGCGTCTAGAGCGAGAGAGAGAGAGCGAGCGAGTTTTAGTTGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGAGAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCACCGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAAGGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCCAAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATCACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTCGAGGCCGGCATCTCCAAGAACGGCCAGAC] [+] EMBL BM637788 [CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGACTTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGAGCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGATATTGCTAAAGGAATAGGAAGCGTCTAGAGCGAGAGAGAGAGAGCGAGCGAGTTTTAGTTGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGAGAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCACCGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAAGGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCGGAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCCAAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATCACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTCGAGGCCGGCATCTCCAAGAACGGCCAGAC] consensusID : consensus_184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 551 fasta sequence [GAGGTAAGACAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTAAGTGCTAGTCATTAGCTAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGTTCCCTCA] [+] EMBL CNS09BRA [GAGGTAAGACAGATTGATAGCTCTTTCTCAAACTTAAGGGTAGTGGTGCATGGCCGTTCTTAGTTCGTGGAATGATTTGTCTGGTTAATTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAGTGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACTTAGTTTGCCCTGCTTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAACAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCACGCGTGCTACAATGTGAGCAGCAGCGTGTTCTCGCCTTATGGCGCCCCCATTCCGAGAGGAACGGGAAATCACCCAAATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTAAGTGCTAGTCATTAGCTAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGTTCCCTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_184#0 CCGAAGCGAACGTGCGCTGGTGCAGTTTCGTCCTTTTTCATTCCGGAACAGTCTGCAGAC 60 consensus_184#1 -------------GAGGTAAGACAGATTGATAGCTCTTTCT--------------CAAAC 33 * * * *** ** * * ** * ** ** consensus_184#0 TTGAGAGAGGCAGGATTTGTGTTTCTGTGCGTATTTTCGGCAAATCGTACGAGTGAGCGA 120 consensus_184#1 TTAAGGGTAGTGG----TGCATGGCCGTTCTTAGTT-CGTGGAATGATTTGTCTGGTTAA 88 ** ** * * * ** * * ** * ** ** ** *** * * ** * consensus_184#0 GCGTTTGGTGTCCCCCCCTTTAACCCGGCATCAGCAAGACACAAAGCAAAAGAAAACGGA 180 consensus_184#1 ----------TTCCGATAACGAACGCGACTCAGTCAAGCTAACTAGAACGCTGTCAGTAG 138 * ** *** ** * **** * ** * * consensus_184#0 TATTGCTAAAGGAATAGGAAGCGTCTAGAGCGA-GAGAGAGAGAGCGAGCGAGTTTTAGT 239 consensus_184#1 TGTGCCTCCGGGCGCACCTGACGTTAGGAGTGGCGGGTGTCCTCACGGGTGCCCGTCACT 198 * * ** ** * *** *** * * * * ** * * * * * consensus_184#0 TGGATTTTGTTTTGAGCCAGCAGTAGCAGACCCCGTAAACGGCCGCAGAATGGGAAAGGA 299 consensus_184#1 TAG--TTTGCCCTGC-TTAGCGGGACAACTTGTGTTTAGCAAGATGAGATTGAGCGATAA 255 * * **** ** *** * * * * * * *** ** * * * consensus_184#0 GAAGACTCATATTAACATCGTCGTCATCGGTCACGTCGACTCCGGCAAGTCGACCACCAC 359 consensus_184#1 CAGGTCCGTGATGCCCTTAGATGTTCTGGGCTGCA-CGCGTGCTACAATGTGAGCAGCAG 314 * * * ** * * * ** * ** * ** * * *** ** ** ** consensus_184#0 CGGCCATCTGATCTACAAGTGCGGCGGTATCGACAAGCGTACGATCGAGAAGTTCGAGAA 419 consensus_184#1 CGTGT-TCTCGCCTTATGGCGCCCCCATTCCGAGAGG------AACGGGAAATCACCCAA 367 ** *** ** * ** * * *** * * * ** *** * ** consensus_184#0 GGAGGCGCAGGAAATGGGCAAGGGCTCGTTCAAGTACGCCTGGGTGCTGGACAAGCTGAA 479 consensus_184#1 ATGCTCATTTAGTAGGGATTGGGGACTGCAATGGTCCCCATGAACCTGGAATTTCTAGTA 427 * * ** *** * ** * * ** * * * * consensus_184#0 GGCG--GAGCGTGAGCGTGGTATCACCATCGATATCGCGCTGTGGAAGTTCGAAACGTCC 537 consensus_184#1 AGTGCTAGTCATTAGC-TAGCGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTC- 485 * * * * *** * * ** ** ** ** * * **** consensus_184#0 AAGTACTACGTGACGATCATCGACGCCCCTGGCCATCGCGATTTCATCAAGAACATGATC 597 consensus_184#1 -GCTACTACCGATGGATCATTCTTTCTATTCGATCCGAGGAAACAACCAGCAGCATGAGT 544 ****** ****** * * * ** * ** * ***** consensus_184#0 ACCGGCACGTCCCAGGCGGACTGTGCCGTGCTGATCGTTGCCGCCGGTACCGGCGAGTTC 657 consensus_184#1 TCCCTCA----------------------------------------------------- 551 ** ** consensus_184#0 GAGGCCGGCATCTCCAAGAACGGCCAGAC 686 consensus_184#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||