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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATCCTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGGTGAAAAGCTTTCATTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAATAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATATAAAAGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTATTTTTACATACATTGCTTCTCTCAGGCAGATGGAAAAGGTCGTGTAAAAGGAAACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTTTATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAACGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTAATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTTAGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA]
[+] EMBL BX610296 [ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATCCTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGGTGAAAAGCTTTCATTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAATAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATATAAAAGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTATTTTTACATACATTGCTTCTCTCAGGCAGATGGAAAAGGTCGTGTAAAAGGAAACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTTTATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAACGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTAATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTTAGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA]
consensusID : consensus_1844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence
[CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGCAATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATAAATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGGTTTAAAATAAAGCGGAGATTGTGACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGTGCTATGGTGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTGTTTGCTCATGTTCAAACAATCAATAGTAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATATAAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTATATCTAGTATTCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAAACAATCATAACTCTGTCC]
[+] EMBL AL694380 [CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGCAATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATAAATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGGTTTAAAATAAAGCGGAGATTGTGACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGTGCTATGGTGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGTTCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTGTTTGCTCATGTTCAAACAATCAATAGTAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATATAAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTATATCTAGTATTCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAAACAATCATAACTCTGTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1844#0 ------------------------------------------------------------
consensus_1844#1 CCCGAGTTGACACTATGAGACACTGGAAAACTGTACACTCTGGTACGTAAAAATCAAAGC 60
consensus_1844#0 ------------------------------------------------------------
consensus_1844#1 AATTATAGTTCGCAATTAATTGTGACATTTAACAGCAGCAGCTCACATTTATGAAGCATA 120
consensus_1844#0 ---------------ACAAAGTTCCGATTCCGAATGGGGGTTCAAAATAAAGAGGAGATC 45
consensus_1844#1 AATTTTGCCTTACTTACAAAGTTCCGATTCCGAATGGGG-TTTAAAATAAAGCGGAGATT 179
************************ ** ********* ******
consensus_1844#0 CTACCGGCGTTCGGTAGGAGAGATGGTAGACGAAGCAAAGAAGCTAAAGCGTTGCTATGG 105
consensus_1844#1 GT---GACGAACGCCGGGAGAGTTGGCAGAGAAAGCAAAGAAGCTAAAGCGT-GCTATGG 235
* * ** ** ****** *** *** ******************** *******
consensus_1844#0 TGAAAAGCTTTCATTTTTTTT-AAATTAAAATTACATACTTGCTGCTACTAAGACTAAGT 164
consensus_1844#1 TGAAAAGCTTTCTTTTTTTTTTAAATTAAAATTACATACTTGCTGCTACTAAGACTAAGT 295
************ ******** **************************************
consensus_1844#0 TCATTCCGTTTCCATACACAGTGGGGTGTGGTTTTAGTTTGCTCATGTTCAAACAATCAA 224
consensus_1844#1 TCATTCCGTTTCCATACACAGTGGGGTGTGGTTTT-GTTTGCTCATGTTCAAACAATCAA 354
*********************************** ************************
consensus_1844#0 TAGTAAAAAAACAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTAAAGGTATAT 284
consensus_1844#1 TAGTAAAAAA-CAATTGTTTACATCACTTCTCAGTGTTCACAAATCATGTANAGGTATAT 413
********** **************************************** ********
consensus_1844#0 AAA-AGGGGATGTGGATAACAAACGAACGAATAGAAACGTGAAACCTTAATATCTAGTAT 343
consensus_1844#1 AAACAGGGGATGTGGATAACAAATGAACGAATAGAAACGTGAAACTTTA-TATCTAGTAT 472
*** ******************* ********************* *** **********
consensus_1844#0 TTT---TACATACATTGCTT-CTCTCAGGCAGATGGAAA---AGGTCGTGTAA-AAGGAA 395
consensus_1844#1 TCNCNCTACATACATTGCTTTNTCTCAGGCAGATGGCAACACNGGTCGTGTCACAAGGAA 532
* ************** ************** ** ******** * ******
consensus_1844#0 ACAATCATAACTTGTTTTTTTTTTTTTTTGGGAATGTGCTTCAATTTTTTGAGTGTTTTT 455
consensus_1844#1 ACAATCATAACTCTGTCC------------------------------------------ 550
************ *
consensus_1844#0 TATGTTTTAAAATACATTTTCTACATTTTTTGTCTTCTTAAAATAAAGAATAACAAGGAA 515
consensus_1844#1 ------------------------------------------------------------
consensus_1844#0 CGGTTAGCAAATGGTAACAGTAAAGAGCATAGTAGGCGGCGAGAAGCATTTAGAAAAGTA 575
consensus_1844#1 ------------------------------------------------------------
consensus_1844#0 ATGTAAACTAATGTCGAAGCTGTAGCTGTTTCTTTCAACTCTAGCAAATGCAAATGGGTT 635
consensus_1844#1 ------------------------------------------------------------
consensus_1844#0 AGAGACAAAAACACCAAATCCACAAGAAAAATCGTGTTTAAAGAGGAAAGGATTGGA 692
consensus_1844#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||