These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCCTCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCGAACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTCTATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAGGTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGATTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAAGATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATC] [+] EMBL BM592047 [CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCCTCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCGAACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTCTATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAGGTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGATTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAAGATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATC] consensusID : consensus_1848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence [AATCCCCCGAGGTAAAGTGTCGTATAAGGATATTTATGAAATTTTTTAACAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATATCCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCTTCTTGAGGGTTATGGGGTGTGAGGGT] [+] EMBL AL694395 [AATCCCCCGAGGTAAAGTGTCGTATAAGGATATTTATGAAATTTTTTAACAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAACGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATATGTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAAACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGTTTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACGGATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATATCCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCTTCTTGAGGGTTATGGGGTGTGAGGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1848#0 CCGGATAGATGACGGCAGGCGCGCGCCTAAGATGTGCGGATGTTGATGTAAGACTGGCCC 60 consensus_1848#1 ------------------------------------------------------------ consensus_1848#0 TCCTCCTGCGTGTGTGATTGCCAAGGCATCGAAAACGCGGGTGGTTGCGAAATCCGTGCG 120 consensus_1848#1 ------------------------------------------------------------ consensus_1848#0 AACTGAAAGTCTGCTTTAGGGAAACGAAATGGAAGTTTACTTTCGCTTTTCTGTTTAGTC 180 consensus_1848#1 ------------------------------------------------------------ consensus_1848#0 TATCACTAACTACAAGCCACTAAGATTAGCAAGATCTGCATGACGTGTAGTGCACGGCAG 240 consensus_1848#1 ------------------------------------------------------------ consensus_1848#0 GTGCAGCGAATCGGGCAACTCGGAGGAAGGAAGCTCGGAATCGATCAATCATTATTGTGA 300 consensus_1848#1 ------------------------------------------------------------ consensus_1848#0 TTAGCAGTAGCAAAGGCAACGTTTGTAACTGAAGCGAAGCGAATGAAAGTGTCGTATAAA 360 consensus_1848#1 --------------------------------AATCCCCCGAGGTAAAGTGTCGTATAAG 28 * *** ************** consensus_1848#0 GATAATTTATTGAAATTTTTTAAACAGTTTTGCCCACTCCAATGAGCGAGCGTGGTAGAA 420 consensus_1848#1 GATA-TTTAT-GAAATTTTTTAA-CAGATTTGCCCACTTCAATGAGCGAGCGAGGTGGAA 85 **** ***** ************ *** ********** ************* *** *** consensus_1848#0 CGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATAT 480 consensus_1848#1 CGGGAATAACTTTAAATACGATCTGCGCCAGAACGATCGAACAGAATCGAATGCTTATAT 145 ************************************************************ consensus_1848#0 GTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAA 540 consensus_1848#1 GTGTAAAATAGTTCATTATATTTGCGGACACTAGTGTGTTTTAAGAATCTTGATCCGGAA 205 ************************************************************ consensus_1848#0 ACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCCGGATTTGTGTACAGT 600 consensus_1848#1 ACGCGTGCTACGGAGGAAAAGGGTTAACCGTGGGCGCTTGTTTCAGGATTTGTGTACAGT 265 ******************************************** *************** consensus_1848#0 TTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACG 660 consensus_1848#1 TTATTGCGCCGAGAGGGAGAACTACTAGGGATGGCGGGAGCGAGAATTAATTTAGAAACG 325 ************************************************************ consensus_1848#0 GATC-------------------------------------------------------- 664 consensus_1848#1 GATCACGAATGAAACGAGCGAGTTTTTCGATGATTGTTGTTGTTAAGCGATATAAAATAT 385 **** consensus_1848#0 ------------------------------------------------------------ consensus_1848#1 CCGGCTCCTGCAGAACCAATAATACGCAAATCGGGAGGACGATCGAGTCGAGGATCACCT 445 consensus_1848#0 -------------------------- consensus_1848#1 TCTTGAGGGTTATGGGGTGTGAGGGT 471 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||