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These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1851 cluster # 1851       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1851#0 length = 581 sequences # 1  
consensus_1851#1 length = 199 sequences # 1  

consensusID : consensus_1851#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGGGCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGAGACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAAAAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACAGTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTGTAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCCCTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACACGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT]

[+] EMBL BM576314             [CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGGGCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGAGACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAAAAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACAGTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTGTAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCCCTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACACGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT]


>consensus_1851#0 CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGG GCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGA GACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAA AAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC ATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACA GTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTG TAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCC CTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACA CGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT



consensusID : consensus_1851#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence
                              [CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]

[+] EMBL BM598449             [CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA]


>consensus_1851#1 CCGGTTGATTGTAAGAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTT AAATAATAGAAAACATAATAGCGATCACACACAGACACAGACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1851#0      CCGCACCCTACTGTCCCGACGATTATCGCGAACGGTCACACGATCGCGGGCTGGATCGGG 60
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      GCGAGAAGCAGTACTTTACGAAGACTTCCCGTACCCGCTCGGGCCATTAAGAGAATTAGA 120
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      GACAAAGGTAAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGTTGTCAGTTGATTGTAA 180
consensus_1851#1      ----------------------------------------------CCGGTTGATTGTAA 14
                                                                     * ***********

consensus_1851#0      AAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC 240
consensus_1851#1      GAACAAACTCCACAGCGAGTAAAATGAGGAAAAAAAAACTATTTTTAAATAATAGAAAAC 74
                       ***********************************************************

consensus_1851#0      ATAATAGCGATCACACACACACACACACACACACACACACACACACACACACACACACAC 300
consensus_1851#1      ATAATAGCGATCACACACAGACACAGACACACACACACACACACACACACACACACACAC 134
                      ******************* ***** **********************************

consensus_1851#0      ACACACACACACACAGACGTACACAGGTACACACAGGTACACGGTAATGAGTCCTTTACA 360
consensus_1851#1      ACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC 194
                      *************** **  *****   *******   ****    *      *      

consensus_1851#0      GTGGACCCTATTTTGGGATCTCTTCTTCAGCTCTTGTTCTGTGTTGTGTGGTTGTGGCTG 420
consensus_1851#1      ACACA------------------------------------------------------- 199
                          *                                                       

consensus_1851#0      TAGGTTTAGTACATTGTATTACAAAGGACACACAATTTCCCTTTATTTCCCTTTCCTCCC 480
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      CTTTTTGCTCTTGATTTTTTGCTGAAACATTTTTGTTGATTTTGATGCCACGATCCGACA 540
consensus_1851#1      ------------------------------------------------------------
                                                                                  

consensus_1851#0      CGACAGGACTTACACGTTCCGAATTACAGCCGGGACAAGAT 581
consensus_1851#1      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)