cluster # 1855

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1855 cluster # 1855 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1855#0 length = 591 sequences # 1

consensus_1855#1 length = 568 sequences # 1

consensusID : consensus_1855#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 591
fasta sequence

                              [GCATGCTCGAGCAGAATNCGCCACGAGGTTTAAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACCCCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCAATAATACCAGCCTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTAATTAACAGGTCAGAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATTCGCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCCGCATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGTACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTAATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAACACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCGGGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA]

[+] EMBL AL696631             [GCATGCTCGAGCAGAATNCGCCACGAGGTTTAAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACCCCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCAATAATACCAGCCTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTAATTAACAGGTCAGAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATTCGCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCCGCATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGTACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTAATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAACACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCGGGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA]




>consensus_1855#0
GCATGCTCGAGCAGAATNCGCCACGAGGTTTAAATGTGCCACAAACGCGGGCAGTCTTCT
CGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACCCCCTTTACGCTGAGCGG
GTGTGCCGAAACGTCAGCTCTTAATTGATTCAATAATACCAGCCTTTATATCACCCCCCG
CGCACCCGTACACCGGTGGTAATTAACAGGTCAGAATACAAGATGCGCTTGCCTCTCTCC
ACGCGTGTAGATTCGCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGA
GCGATATTGCCCGCATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAG
TAACGATGGGTACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCT
GACTTGGCCTAATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACA
ACGGTTAACAACACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAAC
GCGAAAACCCGGGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA

consensusID : consensus_1855#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 568
fasta sequence

                              [CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAAAGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTTCCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGAGGCTTCACCCCGGTTGGGTTGATTATGAACCAACCCCGTTACGCTGAGCGGGTGTGCCAAATGTCAGCTCTTAATTGATTCATAGTTCGTAAAAACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCGGCACCCGTACACCGGTGGTAATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATTCGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCCGCCATATCAAGCTTCCGTACGATGAGATCGGTGACTTTCATCCCCAGTACGATGGGTACCTGGCGTCCACCGTCATCAAGCAGGCCGACACC]

[+] EMBL AL694428             [CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAAAGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTTCCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACAAACGCGGGCAGTCTTCTCGAGCGAGGCTTCACCCCGGTTGGGTTGATTATGAACCAACCCCGTTACGCTGAGCGGGTGTGCCAAATGTCAGCTCTTAATTGATTCATAGTTCGTAAAAACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCGGCACCCGTACACCGGTGGTAATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATTCGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCCGCCATATCAAGCTTCCGTACGATGAGATCGGTGACTTTCATCCCCAGTACGATGGGTACCTGGCGTCCACCGTCATCAAGCAGGCCGACACC]




>consensus_1855#1
CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAA
AGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTT
CCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACA
AACGCGGGCAGTCTTCTCGAGCGAGGCTTCACCCCGGTTGGGTTGATTATGAACCAACCC
CGTTACGCTGAGCGGGTGTGCCAAATGTCAGCTCTTAATTGATTCATAGTTCGTAAAAAC
AGAATCGTCGGAGGAGTGATTTTATATCACCCCCCGGCACCCGTACACCGGTGGTAATTA
ACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATTCGCC
CGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCCGCCA
TATCAAGCTTCCGTACGATGAGATCGGTGACTTTCATCCCCAGTACGATGGGTACCTGGC
GTCCACCGTCATCAAGCAGGCCGACACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1855#0      ------------------------------------------------------------
consensus_1855#1      CGAGGTTAAGAAATAATCGAAAACAAAAAGGGAAATCATATTTCTGAGATCTTCGAAAAA 60
                                                                                  

consensus_1855#0      ------------------------------------------------------------
consensus_1855#1      AGGTTGTTTGTGCAAAAAACAACAAAAGCCGTAGCTCCAAATGATTGCAGCCCGCTTCTT 120
                                                                                  

consensus_1855#0      ---------------GCATGCTCG-AGCAGAATN-CGCCACGAGGTTTAAATGTGCCACA 43
consensus_1855#1      CCGCCCATTTGAGCGGCTGGCGGGTAGTAAATTAATTTTATGTGTTTTTAATGTGCCACA 180
                                     **  **  * ** * * *      * * * *** ***********

consensus_1855#0      AACGCGGGCAGTCTTCTCGAGCGTAGGCTTCACCCTGGTTGGGTTGATTATGAACCAACC 103
consensus_1855#1      AACGCGGGCAGTCTTCTCGAGCG-AGGCTTCACCCCGGTTGGGTTGATTATGAACCAACC 239
                      *********************** *********** ************************

consensus_1855#0      CCCTTTACGCTGAGCGGGTGTGCCGAAACGTCAGCTCTTAATTGATTCA------ATAAT 157
consensus_1855#1      CCGTT-ACGCTGAGCGGGTGTGCC-AAATGTCAGCTCTTAATTGATTCATAGTTCGTAAA 297
                      ** ** ****************** *** ********************       *** 

consensus_1855#0      ACCAGC----------------CTTTATATCACCCCCCGCGCACCCGTACACCGGTGGTA 201
consensus_1855#1      AACAGAATCGTCGGAGGAGTGATTTTATATCACCCCCCG-GCACCCGTACACCGGTGGTA 356
                      * ***                  **************** ********************

consensus_1855#0      ATTAACAGGTCA--------GAATACAAGATGCGCTTGCCTCTCTCCACGCGTGTAGATT 253
consensus_1855#1      ATTAACAGGTCAAAAAACAAGAATACAAGATGCGCTTGCCTCTTTCCACGCGTGTAGATT 416
                      ************        *********************** ****************

consensus_1855#0      CGCC-GCTGCATCTGTGAAGCTGACGGCAGGGACGATAAAGCGATGGAGCGATATTGCCC 312
consensus_1855#1      CGCCCGCTGCATCTGTGAAGCTGACGGCAGGGACGATAAACGGATGGAGCGATATTGCCC 476
                      **** ***********************************  ******************

consensus_1855#0      GC-ATATCAAAGCTTCCGTACAGATGAGATCGGTGACTTTCATCCCCAGTAACGATGGGT 371
consensus_1855#1      GCCATATCAA-GCTTCCGTAC-GATGAGATCGGTGACTTTCATCCCCAGTA-CGATGGGT 533
                      ** ******* ********** ***************************** ********

consensus_1855#0      ACCCTGGGCAGTACCAACGTCATCAAAGCACGCACACGACAGCCGTGCTGACTTGGCCTA 431
consensus_1855#1      ACCTGGCGT----CCACCGTCATCAA-GCAGGCCGACACC-------------------- 568
                      ***  * *     *** ********* *** **  **  *                    

consensus_1855#0      ATCCCGGNTTGGCCACGGTTAAACCCCCTGGCGAACCTTGGTACACACAACGGTTAACAA 491
consensus_1855#1      ------------------------------------------------------------
                                                                                  

consensus_1855#0      CACAGGCCAGCCTTGGGGNAACCGGAATCCTNGANTTCAATCNCTTAACGCGAAAACCCG 551
consensus_1855#1      ------------------------------------------------------------
                                                                                  

consensus_1855#0      GGGTAACACGCGGTCGTACCAAAACCGGGAACACCCGGGA 591
consensus_1855#1      ----------------------------------------