cluster # 187

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Anopheles gambiae
cluster # 187 cluster # 187 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_187#0 length = 592 sequences # 1

consensus_187#1 length = 464 sequences # 1

consensusID : consensus_187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence

                              [CAGGTAACGATGGTAACGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGTTGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACATTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACACCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTGAGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTGGCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCGGCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCACAGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTACGAGAAGCGTGACATGAAGGTGATCAAGCTGTCGTACAAGGCGGGCAATCAGGGTATCTTTATCGATGCGAACATTCACGCCCGCGAATGGATCACTTCGGCTACCGTTACGTGGCTACTGAACGAGCTGC]

[+] EMBL BX628948             [CAGGTAACGATGGTAACGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGTTGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACATTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACACCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTGAGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTGGCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCGGCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCACAGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTACGAGAAGCGTGACATGAAGGTGATCAAGCTGTCGTACAAGGCGGGCAATCAGGGTATCTTTATCGATGCGAACATTCACGCCCGCGAATGGATCACTTCGGCTACCGTTACGTGGCTACTGAACGAGCTGC]




>consensus_187#0
CAGGTAACGATGGTAACGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGTTG
GTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACATT
GCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACACC
TTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTGAG
GTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTGGC
AACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCGGC
TGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCACAG
TACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTACGAGAAGCGTGACATGAAG
GTGATCAAGCTGTCGTACAAGGCGGGCAATCAGGGTATCTTTATCGATGCGAACATTCAC
GCCCGCGAATGGATCACTTCGGCTACCGTTACGTGGCTACTGAACGAGCTGC

consensusID : consensus_187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [GGCAGAATCGGCACGNGGCGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGTTGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACATTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACACCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTGAGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTGGCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCGGCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCACAGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTAC]

[+] EMBL BX467139             [GGCAGAATCGGCACGNGGCGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGTTGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACATTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACACCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTGAGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTGGCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCGGCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCACAGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTAC]




>consensus_187#1
GGCAGAATCGGCACGNGGCGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGT
TGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACA
TTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACA
CCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTG
AGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTG
GCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCG
GCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCAC
AGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_187#0      --CAGGTAACGATGGTAACGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGT 58
consensus_187#1      GGCAGAATCGGCACGNGGCGGAACGGTTCGTGGGTCTAGCGCTAGTTTGCGCAGTGACGT 60
                       ***     *   *   ******************************************

consensus_187#0      TGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACA 118
consensus_187#1      TGGTAGCTTGCGCTCACGGCAAGCTTAGCTACGAAAACTATGCAGTGTATAGGGTTGACA 120
                     ************************************************************

consensus_187#0      TTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACA 178
consensus_187#1      TTGCTTCGGAGAAACAGCTGGCGGTGCTGCAACACCTGGAGTCCCTTCCCAATGGGTACA 180
                     ************************************************************

consensus_187#0      CCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTG 238
consensus_187#1      CCTTTCTGGACTTTCCATCGAGTGTGAACAAAAGCGTTGAAGTTGTCATTCCACCCAGTG 240
                     ************************************************************

consensus_187#0      AGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTG 298
consensus_187#1      AGGTAGTGAATGCGCAAAGACTTTTCCGACAGCATGGCATCACGAATAGCCTCATCACTG 300
                     ************************************************************

consensus_187#0      GCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCG 358
consensus_187#1      GCAACCTGAAACAAATCCTTGATCAGGAGCGTCCCGCTCGCAGAAAGGCGGAAGGTTTCG 360
                     ************************************************************

consensus_187#0      GCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCAC 418
consensus_187#1      GCTGGACCGACTATCATACCCTCGAAGAGATCTACGCCTGGCTGGACGAGATGGTGGCAC 420
                     ************************************************************

consensus_187#0      AGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTACGAGAAGCGTGACATGA 478
consensus_187#1      AGTACAGCACCGTCCTGTCGGTGGAAACCATTGGACAAACGTAC---------------- 464
                     ********************************************                

consensus_187#0      AGGTGATCAAGCTGTCGTACAAGGCGGGCAATCAGGGTATCTTTATCGATGCGAACATTC 538
consensus_187#1      ------------------------------------------------------------
                                                                                 

consensus_187#0      ACGCCCGCGAATGGATCACTTCGGCTACCGTTACGTGGCTACTGAACGAGCTGC 592
consensus_187#1      ------------------------------------------------------