cluster # 1872

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 1872 cluster # 1872 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1872#0 length = 779 sequences # 1

consensus_1872#1 length = 586 sequences # 1

consensusID : consensus_1872#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 779
fasta sequence

                              [CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACAAGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGCGTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTAGACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGAAAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGCGGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCCAGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAAACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATACGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTGCTTCCAGTCGCAAGCGATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTAACGGTTTACCTNAACATGGTGCGANCACANGGCTAAANNATNGTAGGGTCAACGAAATCT]

[+] EMBL AL694495             [CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACAAGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGCGTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTAGACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGAAAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGCGGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCCAGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAAACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATACGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTGCTTCCAGTCGCAAGCGATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTAACGGTTTACCTNAACATGGTGCGANCACANGGCTAAANNATNGTAGGGTCAACGAAATCT]




>consensus_1872#0
CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACA
AGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGC
GTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTA
GACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGA
AAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGC
GGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAAC
AAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGG
TAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCC
AGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAA
ACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATA
CGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTG
CTTCCAGTCGCAAGCGATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTAA
CGGTTTACCTNAACATGGTGCGANCACANGGCTAAANNATNGTAGGGTCAACGAAATCT

consensusID : consensus_1872#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CCGGACAAAATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATATGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAACAACAAAAACAAACAAGTAAATGCAAGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGTGATATTACAAAACAAAAACAAGAGAACGGACAAGGTGCGTACGAAGGTGAAATGGGAGCTCCACGACAGCTCGTCCGTTCGAAGGCTAATGAAGATGGAGTAATATAGCAAATATGCGCTGCTTCAGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTGTGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGTTATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAATTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGTTTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT]

[+] EMBL BM603890             [CCGGACAAAATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATATGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAACAACAAAAACAAACAAGTAAATGCAAGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGTGATATTACAAAACAAAAACAAGAGAACGGACAAGGTGCGTACGAAGGTGAAATGGGAGCTCCACGACAGCTCGTCCGTTCGAAGGCTAATGAAGATGGAGTAATATAGCAAATATGCGCTGCTTCAGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTGTGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGTTATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAATTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGTTTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT]




>consensus_1872#1
CCGGACAAAATCAAACCAACAAACAAACAAGAGAGAAATATATAATCGCACACTTGGCCG
GCTGGCGTCGTAAGTGTATATGAAAGGTAATCAAAACGCATACAAAAGTAGCACAAAAAC
AACAAAAACAAACAAGTAAATGCAAGTAAATGCTGAACCCCAAATGCCATCAAAATACAC
TCGTGATATTACAAAACAAAAACAAGAGAACGGACAAGGTGCGTACGAAGGTGAAATGGG
AGCTCCACGACAGCTCGTCCGTTCGAAGGCTAATGAAGATGGAGTAATATAGCAAATATG
CGCTGCTTCAGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTT
AGTGTGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCA
ATGTTATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCA
AGAATTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTA
TAGTTTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1872#0      CCGCGGTTAGAGAGAGAGAAAACAGAACAGCAAAAAGAAAGCATAACGAAAGTATAAACA 60
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      AGAAAACGCACAACACTCCGAACAAGTGCAGACAATAACGAAACGAAAGTAGTGTGAAGC 120
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      GTGTAATGCTTGCAACAAAACAGCCACTAAACGAACAAATAATATTTATATTCTGTTGTA 180
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      GACATTTTCACTGAATCAAAACTTATTAGCCCCAAAACAAAGGAAAACAAACAAACAAGA 240
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      AAACGCTAAAACCGACAGGTGAAGGTTACTATTCTTCAAATGGCTTAAGTAACTGCTCGC 300
consensus_1872#1      ------------------------------------------------------------
                                                                                  

consensus_1872#0      GGTACTGTACCCTGTCTGTAGGGGGTNCTCGGATGGACAAGATCAAACCAACAAACAAAC 360
consensus_1872#1      --------------------------------CCGGACAAAATCAAACCAACAAACAAAC 28
                                                        ****** *******************

consensus_1872#0      AAGAGAGAAATATATAATCGCACACTTGGCCGGTTGGCTTGGTAAGTGTNTACTGAAAGG 420
consensus_1872#1      AAGAGAGAAATATATAATCGCACACTTGGCCGGCTGGCGTCGTAAGTGTATA-TGAAAGG 87
                      ********************************* **** * ******** ** *******

consensus_1872#0      TAATCAAAACGCATACAAAAGTAGCACAAAAAACAAACAACAAACAAACAAGTAAATGCC 480
consensus_1872#1      TAATCAAAACGCATACAAAAGTAGCACAAAAAC--AACAA-AAACAAACAAGTAAATGCA 144
                      ********************************   ***** ****************** 

consensus_1872#0      AGTANATGCTGAACCCCAAATGCCATCAAAATACACTCGTAGATATTACCAAACACAAAA 540
consensus_1872#1      AGTAAATGCTGAACCCCAAATGCCATCAAAATACACTCGT-GATATTACAAAACA--AAA 201
                      **** *********************************** ******** *****  ***

consensus_1872#0      ACAAGAGAACGGACAAGGTACGTACCGANGGTGANACACTGGGAGCCCCACGAACAGATA 600
consensus_1872#1      ACAAGAGAACGGACAAGGTGCGTAC-GAAGGTGAAA---TGGGAGCTCCACGA-CAGCT- 255
                      ******************* ***** ** ***** *   ******* ****** *** * 

consensus_1872#0      CGTCCCGTAACCGNAGGCTAATGAACGATGGAGTAATATTACGACACAAATAGAGCGCTG 660
consensus_1872#1      CGTCCGTT---CGAAGGCTAATGAA-GATGGAGTAATAT-----AGCAAATAT-GCGCTG 305
                      *****  *   ** *********** *************       ******  ******

consensus_1872#0      CTTCCAGTCGCAAGCG-ATNNTTACAGGATNAGTTCATTTGACTAACGACTNNACNGCTA 719
consensus_1872#1      CTTC-AGTCGAACGAGCATACAGATAGTTATTGATAAGATAACGCTAGGTTTAGTTAGTG 364
                      **** ***** * * * **    * **     * * *  * **    *  *       * 

consensus_1872#0      ACGGTTTACCTNAACATGGTGCGANC--ACANGGCTAAANNATNGTA---GGGTCAACGA 774
consensus_1872#1      TGGTAAGGTTAGTATGTGGTAAGATTTAGCCGGGATTAAGAGTTTCACCTAGATCAATGT 424
                        *          *  ****  **     *  ** * **   *   *    * **** * 

consensus_1872#0      AATCT------------------------------------------------------- 779
consensus_1872#1      TATTTAGACTCAGTTATCGTTGGCAACTGATGATATTTTGCTCCCTCCTGTTTGCAAGAA 484
                       ** *                                                       

consensus_1872#0      ------------------------------------------------------------
consensus_1872#1      TTTTTGTATTGTTTTATTCTCGACTTTTTTTTCTTTCATTCAACGTATTTTTTGTATAGT 544
                                                                                  

consensus_1872#0      ------------------------------------------
consensus_1872#1      TTATGAATAAAAGTTCAACTATCACGTTTTTCTTATCGTTTT 586