These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATTTGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTATTTTGTGTTCGTGCCACAGCAAGAGCGACTGTAGGGAGTGGATCGAAAAACGCAAGCAGTGACCAAACACATATCTCGGAAGTGTGGTGCAGAAGATAAAACGCCACCCCGAAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAACCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGCACAGTGTGGTGTGTGTGTGTGTATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGGGCTACGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT] [+] EMBL BM604874 [CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATTTGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTATTTTGTGTTCGTGCCACAGCAAGAGCGACTGTAGGGAGTGGATCGAAAAACGCAAGCAGTGACCAAACACATATCTCGGAAGTGTGGTGCAGAAGATAAAACGCCACCCCGAAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAACCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGCACAGTGTGGTGTGTGTGTGTGTATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGGGCTACGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT] consensusID : consensus_1874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence [CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGGCCAACTTTCAGACCAAGCTGCTGATGCAGGAAAACGAAGCCCAAGACTACCATTTCCAGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACATTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAACTCCAGCAACCAAAGCTCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGATCCTGAAGCGATGGCTGTACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAAGCTGACGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC] [+] EMBL BM576322 [CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGCACCGACGGCGTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCAAACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGACCACGGGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGGCCAACTTTCAGACCAAGCTGCTGATGCAGGAAAACGAAGCCCAAGACTACCATTTCCAGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACATTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAACTCCAGCAACCAAAGCTCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGATCCTGAAGCGATGGCTGTACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAAGCTGACGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1874#0 CCGGATTGGCGTCTTTGCCTGTTGGAAAAGTTGTAGACCGGATTTTTTACATCAACAATT 60 consensus_1874#1 --------------CCGCTAGTTCTAGATCGCGCCCACGCGTCCGCCCACGCGTCCGCCC 46 ** *** * * * ** * ** * consensus_1874#0 TGCTGGTCGTATGTCGATTTCCGTGCAGTTCCGCAGCCGCAAAAGCTATCCCCTTCCGTA 120 consensus_1874#1 ACGCGTCCGGGCACCGACGGC-GTGCGTGTGATTTCTCGCTGACACCCCCCGGATACGCA 105 * ** *** * **** * *** * * ** * ** * consensus_1874#0 TTTTGTGTTCGTGCCACAGCAAGAGCG---ACTGTAGGGA--GTGGATCGAAAAACGCAA 175 consensus_1874#1 AACGGCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCA 165 * * * ** ** * * ** * ** * ** * * * * consensus_1874#0 GCAGTGACCAAACACAT--ATCTCGGAAGTGTGGTGCAGAAGATAAAAC--GCCACCCCG 231 consensus_1874#1 GATGAGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTG 225 * * ** * ** * *** * * ** *** ** * *** * consensus_1874#0 AAAACTTCGTCGAAGCGACTAGAAGTGTGAAGCGCAGCGGCAGCGACGCACCACGGGAAA 291 consensus_1874#1 CTGACCACG--GGCGGCACGGGCACACTGAAGCGGGACGTGCGCGACATGGTGCGGGAGG 283 ** ** * * ** * * ******* ** ***** ***** consensus_1874#0 CCCACGAGAGAGAGGACAGCAGCCAGCAAAAGGACACACGGCTGCCGTGCGGTTGGTGGC 351 consensus_1874#1 CCAACTTTC-AGACCA-AGCTGCTGATGCAGGAAAACGAAGCC-CAAGACTACCATTTCC 340 ** ** *** * *** ** * * * ** ** * * * * consensus_1874#0 ACAGTGTGGTGTGTGTGTGTG-TATGCCTTTCCGAAGGCATTAGAGTGCAGTGAAAGG-G 409 consensus_1874#1 AGCATGCGTCGAGCGCGGACGATACGGAGGGCTCGGACCAGGAGCACACGCTGGGCGACA 400 * ** * * * * * * ** * * ** ** * ** * consensus_1874#0 CTACGGGCACCGACGGCGTGCGTG-TGATTTCTCGCTGACACCCCCCGGATACGCAAACG 468 consensus_1874#1 TTACGTACAAGAGCGAGGCGGACGGTAATGATACGATGAA---CTCCAGCAACCAAAGC- 456 **** ** ** * * * * ** ** *** * ** * ** ** * consensus_1874#0 GCCTCAAAATTGAGGAAATAGAGGAAATCGTGGAGACGGAGGTTATCCTCTCTCCAGATG 528 consensus_1874#1 ---TCGAGCCGCAAGCGGCGCGGCAACCTGCCAAAGCAGTCGGTAAAGA---TCCTGAAG 510 ** * * * * ** * * * * * ** *** ** * consensus_1874#0 AGATGCACCATGAGGAGTTCGAGATCACGATGGTCCCGATGGAATCGACAACCGTGCTGA 588 consensus_1874#1 CGATG-GCTGT-ACGAGCACCGGTTCAACGCGTACCCGACCGATGCGGAGAA---GCTGA 565 **** * * * *** * * *** * ***** ** ** * ***** consensus_1874#0 CCACGGGCGGCACGGGCACACTGAAAGCGGGACGTGCGCGACATGGT 635 consensus_1874#1 CGCTGTCGCAGGAAGCCAATCTGACCGTGCTGCAGGTGTGC------ 606 * * * ** **** * * * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||